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Series GSE57736 Query DataSets for GSE57736
Status Public on Aug 29, 2014
Title Gene expression comparison between Mycobacterium tuberculosis infected monocytes from tuberculous and healthy elders
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Differences in the activity of monocytes/macrophages, important target cells of Mycobacterium tuberculosis, might influence tuberculosis progression. With the purpose of identifying candidate genes for tuberculosis susceptibility we infected with M. tuberculosis monocytes from both, healthy elders (a tuberculosis susceptibility group) and elderly tuberculosis patients, and performed a microarray experiment. We detected 78 differentially expressed transcripts and confirmed these results by quantitative PCR of selected genes. We found that monocytes from tuberculosis patients showed similar expression patterns of these genes regardless of whether they were obtained from younger or elder patients. Only one of the detected genes corresponded to a cytokine: IL-26, a member of the IL-10 cytokine family that we found downregulated in infected monocytes from tuberculosis patients.
 
Overall design We have analyzed total RNA from Mycobacterium tuberculosis infected monocytes. We have isolated CD14+ cells (monocytes) from peripheral blood mononuclear cells by magnetic separation, and infected them for 4 days with 1 bacterium per monocyte. Blood donors were 7 elderly patients with pulmonary tuberculosis (average age: 83 years; sex: 3 men and 4 women) and 8 non-tuberculous volunteers (81 years, 6 men and 2 women).
 
Contributor(s) Rivero-Lezcano OM
Citation(s) 25157980
Submission date May 16, 2014
Last update date Jan 09, 2018
Contact name Octavio Miguel Rivero-Lezcano
E-mail(s) orivero@saludcastillayleon.es
Phone 34 987 234041
Organization name Hospital de Leon
Department Unidad de Investigación
Street address Altos de Nava, s/n
City Leon
State/province Leon
ZIP/Postal code 24008
Country Spain
 
Platforms (1)
GPL13497 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
Samples (15)
GSM1387822 Tuberculosis patient [22T_89_1_1]
GSM1387823 Tuberculosis patient [28T_89_1_2]
GSM1387824 Tuberculosis patient [47T_89_1_3]
Relations
BioProject PRJNA247977

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57736_Normalized_data_all.txt.gz 2.4 Mb (ftp)(http) TXT
GSE57736_RAW.tar 31.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data are available on Series record

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