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| Status |
Public on Jul 24, 2014 |
| Title |
The role of SPK-1 in alternative splicing regulation in C. elegans |
| Organism |
Caenorhabditis elegans |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The aim of this study was to identify target genes of the SR protein kinase SPK-1. spk-1(RNAi) leads to defects in cell polarity. We were therefore primarily interested in genes who exhibit changes in splicing regulation upon depletion of SPK-1 and could underlie the polarity phenotype of spk-1(RNAi).
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| |
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| Overall design |
Transcriptome profiling of control and spk-1(RNAi) worms by RNAseq
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| |
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| Contributor(s) |
Mikl M, Cowan CR |
| Citation(s) |
25199833 |
| Submission date |
Jul 23, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Martin Mikl |
| Organization name |
University of Haifa
|
| Department |
Department of Human Biology
|
| Street address |
Abba Khoushy 199
|
| City |
Haifa |
| ZIP/Postal code |
3498838 |
| Country |
Israel |
| |
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| Platforms (2) |
| GPL13657 |
Illumina HiSeq 2000 (Caenorhabditis elegans) |
| GPL13776 |
Illumina Genome Analyzer IIx (Caenorhabditis elegans) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA255993 |
| SRA |
SRP044752 |
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