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Series GSE6092 Query DataSets for GSE6092
Status Public on Jan 05, 2007
Title IFN-gamma alters the response of Borrelia burgdorferi-activated endothelium to favor chronic inflammation
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Borrelia burgdorferi, the agent of Lyme disease, promotes pro-inflammatory changes in endothelium that lead to the recruitment of leukocytes. The host immune response to infection results in increased levels of IFN-gamma in the serum and lesions of Lyme disease patients that correlate with greater severity of disease. Therefore, the effect of IFN-gamma on the gene expression profile of primary human endothelial cells exposed to B. burgdorferi was determined. B. burgdorferi and IFN-gamma synergistically augmented the expression of 34 genes, seven of which encode chemokines. Six of these (CCL7, CCL8, CX3CL1, CXCL9, CXCL10, and CXCL11) attract T lymphocytes, and one (CXCL2) is specific for neutrophils. Synergistic production of the attractants for T cells was confirmed at the protein level. IL-1beta, TNF-alpha, and LPS also cooperated with IFN-gamma to induce synergistic production of CXCL10 by endothelium, indicating that IFN-gamma potentiates inflammation in concert with a variety of mediators. An in vitro model of the blood vessel wall revealed that an increased number of human T lymphocytes traversed endothelium exposed to B. burgdorferi and IFN-gamma, as compared to unstimulated endothelial monolayers. In contrast, addition of IFN-gamma diminished the migration of neutrophils across B. burgdorferi-activated endothelium. IFN-gamma thus alters gene expression by endothelium exposed to B. burgdorferi in a manner that promotes recruitment of T cells and suppresses that of neutrophils. This modulation may facilitate the development of chronic inflammatory lesions in Lyme disease.
Keywords: Cell response to inflammatory stimuli
 
Overall design Human umbilical vein endothelial cells (HUVEC) were stimulated with Interferon-gamma (IFN-g), Borrelia burgdorferi or both IFN-g and Borrelia or were left unstimulated. Affymetrix HGU133 plus 2.0 slides were used in duplicate for each condition.
 
Contributor(s) Dame TM, Orenzoff BL, Palmer LE, Furie MB
Citation(s) 17202382
Submission date Oct 20, 2006
Last update date Mar 25, 2019
Contact name Lance E Palmer
E-mail(s) lance.palmer@stonybrook.edu
Organization name University at Stony Brook
Department Center for Infectious Diseases
Street address 235 CMM
City Stony Brook
State/province NY
ZIP/Postal code 11794
Country USA
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (8)
GSM141250 HUVEC_UnStim_A
GSM141251 HUVEC_UnStim_B
GSM141252 HUVEC_Bb_A
Relations
BioProject PRJNA97649

Combined analyzed data header descriptions
ProbeSet
Name
Symbol
Acc
UnStim_A
UnStim_B
IFNg_A
IFNg_B
Bb_A
Bb_B
Bb+IFNg_A
Bb+IFNg_b
IFNg vs UnStim
Bb vs UnStim
Bb + IFNg vs UnStim
P-value IFNg vs UnStim
P-value Bb vs Unstim
P-value Bb + IFNg vs UnStim

Data table
ProbeSet Name Symbol Acc UnStim_A UnStim_B IFNg_A IFNg_B Bb_A Bb_B Bb+IFNg_A Bb+IFNg_b IFNg vs UnStim Bb vs UnStim Bb + IFNg vs UnStim P-value IFNg vs UnStim P-value Bb vs Unstim P-value Bb + IFNg vs UnStim
214038_at chemokine (C-C motif) ligand 8 CCL8 AI984980 3.488 3.574 7.462 7.887 3.842 4.008 10.411 10.306 4.143 0.394 6.828 5.155e-07 0.144 1.618e-08
235229_at NA NA AI694413 4.905 4.056 7.886 7.494 4.712 4.293 11.023 9.151 3.209 0.023 5.607 0.001103 0.9713 3.445e-05
205890_s_at ubiquitin D UBD NM_006398 5.21 5.013 9.408 8.944 5.883 6.062 12.037 10.939 4.065 0.861 6.377 1.435e-05 0.05978 6.792e-07
823_at chemokine (C-X3-C motif) ligand 1 CX3CL1 U84487 4.551 4.834 6.974 9.387 6.188 7.834 10.204 10.991 3.488 2.319 5.905 0.004144 0.02745 0.0001969
1566342_at superoxide dismutase 2, mitochondrial SOD2 R34841 4.44 5.928 8.166 7.711 6.56 9.61 10.106 11.351 2.754 2.9 5.544 0.02751 0.02226 0.0008227
203687_at chemokine (C-X3-C motif) ligand 1 CX3CL1 NM_002996 5.924 6.01 7.623 9.266 6.565 7.574 10.279 10.924 2.478 1.102 4.635 0.003658 0.09883 9.007e-05
220987_s_at NUAK family, SNF1-like kinase, 2 NUAK2 NM_030952 5.555 5.94 6.4 6.792 5.902 6.531 8.971 8.71 0.849 0.469 3.093 0.0287 0.1735 2.102e-05
202241_at tribbles homolog 1 (Drosophila) TRIB1 NM_025195 4.876 5.526 6.17 7.62 4.915 6.144 8.416 9.04 1.694 0.329 3.527 0.02506 0.5991 0.000588
229390_at NA LOC441168 AV734646 3.04 3.236 5.749 6.402 3.039 3.394 7.312 7.828 2.937 0.078 4.432 3.675e-05 0.8135 2.348e-06
204698_at interferon stimulated exonuclease gene 20kDa ISG20 NM_002201 5.22 5.267 5.197 7.193 5.166 6.208 7.682 8.202 0.951 0.443 2.698 0.1863 0.5165 0.004237
232593_at NA LINCR AL389981 6.376 5.921 6.457 6.393 6.309 6.259 7.867 8.66 0.276 0.135 2.115 0.4137 0.6837 0.0002877
203915_at chemokine (C-X-C motif) ligand 9 CXCL9 NM_002416 5.608 5.638 11.949 11.874 5.966 5.579 13.329 12.144 6.289 0.149 7.114 8.359e-07 0.7131 3.581e-07
215223_s_at superoxide dismutase 2, mitochondrial SOD2 W46388 5.236 6.641 6.356 7.561 7.015 7.991 9.039 9.052 1.02 1.564 3.107 0.1295 0.03367 0.001201
209774_x_at chemokine (C-X-C motif) ligand 2 CXCL2 M57731 4.318 4.414 6.248 7.656 7.141 8.68 9.36 9.082 2.586 3.545 4.855 0.003424 0.0005742 8.125e-05
230741_at NA NA AI655467 3.828 4.507 6.057 7.037 3.916 4.795 7.151 7.856 2.38 0.188 3.336 0.001679 0.7088 0.0002256
205101_at class II, major histocompatibility complex, transactivator CIITA NM_000246 4.767 4.308 5.914 5.851 4.291 4.033 6.509 7.337 1.345 -0.376 2.386 0.004817 0.2946 0.0001762
229306_at NA NLF2 BE672687 4.41 4.456 6.369 5.545 5.316 5.546 7.293 7.44 1.524 0.998 2.934 0.001654 0.01426 2.909e-05
203973_s_at CCAAT/enhancer binding protein (C/EBP), delta CEBPD NM_005195 6.169 6.795 8.243 8.613 6.575 8.007 9.538 9.675 1.946 0.809 3.124 0.004587 0.1326 0.0003089
218943_s_at DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 DDX58 NM_014314 5.007 5.655 7.893 8.022 5.41 6.242 8.495 9.254 2.627 0.495 3.544 0.0003264 0.2594 4.906e-05
202638_s_at intercellular adhesion molecule 1 (CD54), human rhinovirus receptor ICAM1 NM_000201 7.032 7.597 7.187 8.606 9.301 10.082 10.446 10.892 0.583 2.378 3.354 0.2949 0.002411 0.000325

Total number of rows: 54675

Table truncated, full table size 7554 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GSE6092_RAW.tar 34.7 Mb (http)(custom) TAR (of CEL, EXP)

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