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| Status |
Public on Jan 06, 2015 |
| Title |
Chromatin structure dynamics of hoxa13a, hoxa13b and hoxd13a loci during zebrafish development. |
| Organism |
Danio rerio |
| Experiment type |
Other
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| Summary |
We designed 4C-Seq experiments for hoxa13a, hoxa13b and hoxd13a promoters in three developmental stages in zebrafish embryos: 24, 48 and 60 hpf.
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| Overall design |
4C-seq samples for three different hox13 genes promoters in three developmental stages in zebrafish embryos: 24, 48 and 60 hpf.
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| Contributor(s) |
Gehrke A, Schneider I, Tena JJ, Gómez-Marín C, Nakamura T, Chandran M, de la Calle-Mustienes E, Braasch I, Postlethwait J, Gómez-Skarmeta JL, Shubin N |
| Citation(s) |
25535365 |
| Submission date |
Sep 03, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Juan J. Tena |
| E-mail(s) |
jjtenagu@upo.es
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| Organization name |
CABD/CSIC
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| Street address |
Univ. Pablo Olavide, Ctra. Utrera km1
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| City |
Sevilla |
| ZIP/Postal code |
41013 |
| Country |
Spain |
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| Platforms (1) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
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| Samples (9)
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| GSM1496116 |
4C-Seq for hoxd13a promoter in 24hpf zebrafish |
| GSM1496117 |
4C-Seq for hoxd13a promoter in 48hpf zebrafish |
| GSM1496118 |
4C-Seq for hoxd13a promoter in 60hpf zebrafish |
| GSM1496119 |
4C-Seq for hoxa13a promoter in 24hpf zebrafish |
| GSM1496120 |
4C-Seq for hoxa13a promoter in 48hpf zebrafish |
| GSM1496121 |
4C-Seq for hoxa13a promoter in 60hpf zebrafish |
| GSM1496122 |
4C-Seq for hoxa13b promoter in 24hpf zebrafish |
| GSM1496123 |
4C-Seq for hoxa13b promoter in 48hpf zebrafish |
| GSM1496124 |
4C-Seq for hoxa13b promoter in 60hpf zebrafish |
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| Relations |
| BioProject |
PRJNA260175 |
| SRA |
SRP046268 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE61063_RAW.tar |
13.7 Mb |
(http)(custom) |
TAR (of BEDGRAPH) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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