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Series GSE62189 Query DataSets for GSE62189
Status Public on Nov 24, 2014
Title A computational algorithm to predict shRNA potency
Organisms Gallus gallus; Homo sapiens; Mus musculus; synthetic construct
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 25435137
Submission date Oct 08, 2014
Last update date May 15, 2019
Contact name Simon Robert Vincent Knott
Organization name Cold Spring Harbor Laboratory
Department Biology
Lab Hannon
Street address 1 Bungtown Rd
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
 
Platforms (5)
GPL9423 Illumina Genome Analyzer II (synthetic construct)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL15228 Illumina HiSeq 2000 (synthetic construct)
Samples (179)
GSM1521347 chip 3991 replicate A sort S0
GSM1521348 chip 3991 replicate A sort S1
GSM1521349 chip 3991 replicate A sort S3
This SuperSeries is composed of the following SubSeries:
GSE62183 shRNA Sensor Analysis of DSIR Selected shRNAs
GSE62184 shRNA off target analysis via RNAseq
GSE62185 Sub-genomewide shRNAs constructed using an optimized selection algorithm and microRNA backbone provide stronger evidence for follow-up studies
Relations
BioProject PRJNA263389

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided
SRA Run SelectorHelp

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