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GEO accession:
Series GSE62189
Query DataSets for GSE62189
Status
Public on Nov 24, 2014
Title
A computational algorithm to predict shRNA potency
Organisms
Gallus gallus
;
Homo sapiens
;
Mus musculus
;
synthetic construct
Experiment type
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
25435137
Submission date
Oct 08, 2014
Last update date
May 15, 2019
Contact name
Simon Robert Vincent Knott
Organization name
Cold Spring Harbor Laboratory
Department
Biology
Lab
Hannon
Street address
1 Bungtown Rd
City
Cold Spring Harbor
State/province
NY
ZIP/Postal code
11724
Country
USA
Platforms (5)
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More...
GPL9423
Illumina Genome Analyzer II (synthetic construct)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL15228
Illumina HiSeq 2000 (synthetic construct)
GPL15520
Illumina MiSeq (Homo sapiens)
GPL19064
Illumina MiSeq (Gallus gallus)
Samples (179)
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More...
GSM1521347
chip 3991 replicate A sort S0
GSM1521348
chip 3991 replicate A sort S1
GSM1521349
chip 3991 replicate A sort S3
GSM1521350
chip 3991 replicate A sort S5
GSM1521351
chip 3991 replicate B sort S0
GSM1521352
chip 3991 replicate B sort S1
GSM1521353
chip 3991 replicate B sort S3
GSM1521354
chip 3991 replicate B sort S5
GSM1521355
chip 4001 replicate A sort S0
GSM1521356
chip 4001 replicate A sort S1
GSM1521357
chip 4001 replicate A sort S3
GSM1521358
chip 4001 replicate A sort S5
GSM1521359
chip 4001 replicate B sort S0
GSM1521360
chip 4001 replicate B sort S1
GSM1521361
chip 4001 replicate B sort S3
GSM1521362
chip 4001 replicate B sort S5
GSM1521363
chip 4011 replicate A sort S0
GSM1521364
chip 4011 replicate A sort S1
GSM1521365
chip 4011 replicate A sort S3
GSM1521366
chip 4011 replicate A sort S5
GSM1521367
chip 4011 replicate B sort S0
GSM1521368
chip 4011 replicate B sort S1
GSM1521369
chip 4011 replicate B sort S3
GSM1521370
chip 4011 replicate B sort S5
GSM1521371
chip 4021 replicate A sort S0
GSM1521372
chip 4021 replicate A sort S1
GSM1521373
chip 4021 replicate A sort S3
GSM1521374
chip 4021 replicate A sort S5
GSM1521375
chip 4021 replicate B sort S0
GSM1521376
chip 4021 replicate B sort S1
GSM1521377
chip 4021 replicate B sort S3
GSM1521378
chip 4021 replicate B sort S5
GSM1521379
chip 5421 replicate A sort S0
GSM1521380
chip 5421 replicate A sort S1
GSM1521381
chip 5421 replicate A sort S3
GSM1521382
chip 5421 replicate A sort S5
GSM1521383
chip 5421 replicate B sort S0
GSM1521384
chip 5421 replicate B sort S1
GSM1521385
chip 5421 replicate B sort S3
GSM1521386
chip 5421 replicate B sort S5
GSM1521387
chip 5431 replicate A sort S0
GSM1521388
chip 5431 replicate A sort S1
GSM1521389
chip 5431 replicate A sort S3
GSM1521390
chip 5431 replicate A sort S5
GSM1521391
chip 5431 replicate B sort S0
GSM1521392
chip 5431 replicate B sort S1
GSM1521393
chip 5431 replicate B sort S3
GSM1521394
chip 5431 replicate B sort S5
GSM1521395
chip 5461 replicate A sort S0
GSM1521396
chip 5461 replicate A sort S1
GSM1521397
chip 5461 replicate A sort S3
GSM1521398
chip 5461 replicate A sort S5
GSM1521399
chip 5461 replicate B sort S0
GSM1521400
chip 5461 replicate B sort S1
GSM1521401
chip 5461 replicate B sort S3
GSM1521402
chip 5461 replicate B sort S5
GSM1521403
chip 5471 replicate A sort S0
GSM1521404
chip 5471 replicate A sort S1
GSM1521405
chip 5471 replicate A sort S3
GSM1521406
chip 5471 replicate A sort S5
GSM1521407
chip 5471 replicate B sort S0
GSM1521408
chip 5471 replicate B sort S1
GSM1521409
chip 5471 replicate B sort S3
GSM1521410
chip 5471 replicate B sort S5
GSM1521411
chip 5511 replicate A sort S0
GSM1521412
chip 5511 replicate A sort S1
GSM1521413
chip 5511 replicate A sort S3
GSM1521414
chip 5511 replicate A sort S5
GSM1521415
chip 5511 replicate B sort S0
GSM1521416
chip 5511 replicate B sort S1
GSM1521417
chip 5511 replicate B sort S3
GSM1521418
chip 5511 replicate B sort S5
GSM1521419
chip 5521 replicate A sort S0
GSM1521420
chip 5521 replicate A sort S1
GSM1521421
chip 5521 replicate A sort S3
GSM1521422
chip 5521 replicate A sort S5
GSM1521423
chip 5521 replicate B sort S0
GSM1521424
chip 5521 replicate B sort S1
GSM1521425
chip 5521 replicate B sort S3
GSM1521426
chip 5521 replicate B sort S5
GSM1521427
chip 5541 replicate A sort S0
GSM1521428
chip 5541 replicate A sort S1
GSM1521429
chip 5541 replicate A sort S3
GSM1521430
chip 5541 replicate A sort S5
GSM1521431
chip 5541 replicate B sort S0
GSM1521432
chip 5541 replicate B sort S1
GSM1521433
chip 5541 replicate B sort S3
GSM1521434
chip 5541 replicate B sort S5
GSM1521435
chip 5571 replicate A sort S0
GSM1521436
chip 5571 replicate A sort S1
GSM1521437
chip 5571 replicate A sort S3
GSM1521438
chip 5571 replicate A sort S5
GSM1521439
chip 5571 replicate B sort S0
GSM1521440
chip 5571 replicate B sort S1
GSM1521441
chip 5571 replicate B sort S3
GSM1521442
chip 5571 replicate B sort S5
GSM1521443
shRNA 66708 Replicate A_1
GSM1521444
shRNA 66708 Replicate A_2
GSM1521445
shRNA 66708 Replicate B_1
GSM1521446
shRNA 66708 Replicate B_2
GSM1521447
shRNA 88943 Replicate A_1
GSM1521448
shRNA 88943 Replicate A_2
GSM1521449
shRNA 88943 Replicate B_1
GSM1521450
shRNA 88943 Replicate B_2
GSM1521451
shRNA Mgp1 Replicate A_1
GSM1521452
shRNA Mgp1 Replicate A_2
GSM1521453
shRNA Mgp1 Replicate B_1
GSM1521454
shRNA Mgp1 Replicate B_2
GSM1521455
shRNA Mgp1U1 Replicate A_1
GSM1521456
shRNA Mgp1U1 Replicate A_2
GSM1521457
shRNA Mgp1U1 Replicate B_1
GSM1521458
shRNA Mgp1U1 Replicate B_2
GSM1521459
shRNA Mgp1U3 Replicate A_1
GSM1521460
shRNA Mgp1U3 Replicate A_2
GSM1521461
shRNA Mgp1U3 Replicate B_1
GSM1521462
shRNA Mgp1U3 Replicate B_2
GSM1521463
shRNA Mgp2 Replicate A_1
GSM1521464
shRNA Mgp2 Replicate A_2
GSM1521465
shRNA Mgp2 Replicate B_1
GSM1521466
shRNA Mgp2 Replicate B_2
GSM1521467
shRNA Slpi1U1 Replicate A_1
GSM1521468
shRNA Slpi1U1 Replicate A_2
GSM1521469
shRNA Slpi1U1 Replicate B_1
GSM1521470
shRNA Slpi1U1 Replicate B_2
GSM1521471
shRNA Slpi1U2 Replicate A_1
GSM1521472
shRNA Slpi1U2 Replicate A_2
GSM1521473
shRNA Slpi1U2 Replicate B_1
GSM1521474
shRNA Slpi1U2 Replicate B_2
GSM1521475
shRNA Slpi2 Replicate A_1
GSM1521476
shRNA Slpi2 Replicate A_2
GSM1521477
shRNA Slpi2 Replicate B_1
GSM1521478
shRNA Slpi2 Replicate B_2
GSM1521479
shRNA Slpi4 Replicate A_1
GSM1521480
shRNA Slpi4 Replicate A_2
GSM1521481
shRNA Slpi4 Replicate B_1
GSM1521482
shRNA Slpi4 Replicate B_2
GSM1521483
shERWOOD-1U T0
GSM1521484
shERWOOD-1U T6A
GSM1521485
shERWOOD-1U T6B
GSM1521486
shERWOOD-1U T6C
GSM1521487
DSIR T0
GSM1521488
DSIR T6A
GSM1521489
DSIR T6B
GSM1521490
DSIR T6C
GSM1521491
shERWOOD T0
GSM1521492
shERWOOD T6A
GSM1521493
shERWOOD T6B
GSM1521494
shERWOOD T6C
GSM1521495
TRC T0
GSM1521496
TRC T6A
GSM1521497
TRC T6B
GSM1521498
TRC T6C
GSM1521499
shERWOOD-1U-ULTRAMIR T0
GSM1521500
shERWOOD-1U-ULTRAMIR T T6A
GSM1521501
shERWOOD-1U-ULTRAMIR T T6B
GSM1521502
shERWOOD-1U -ULTRAMIR TT6C
GSM1521503
shERWOOD-ULTRAMIR T0
GSM1521504
shERWOOD-ULTRAMIR T6A
GSM1521505
shERWOOD-ULTRAMIR T6B
GSM1521506
shERWOOD-ULTRAMIR T6C
GSM1521507
Sort 0
GSM1521508
Sort 1
GSM1521509
Replicate A Sort S3
GSM1521510
Replicate B Sort S3
GSM1521511
Replicate C Sort S3
GSM1521512
Replicate A Sort S5
GSM1521513
Replicate B Sort S5
GSM1521514
Replicate C Sort S5
GSM1521515
Replicate A Sort S7
GSM1521516
Replicate B Sort S7
GSM1521517
Replicate C Sort S7
GSM1521518
shRPA3 in mir30 Replicate A
GSM1521519
shRPA3 in mir30 Replicate B
GSM1521520
shRPA3 in ultramiR Replicate A
GSM1521521
shRPA3 in ultramiR Replicate B
GSM1521522
shRenilla in mir30 Replicate A
GSM1521523
shRenilla in mir30 Replicate B
GSM1521524
shRenilla in ultramiR Replicate A
GSM1521525
shRenilla in ultramiR Replicate B
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE62183
shRNA Sensor Analysis of DSIR Selected shRNAs
GSE62184
shRNA off target analysis via RNAseq
GSE62185
Sub-genomewide shRNAs constructed using an optimized selection algorithm and microRNA backbone provide stronger evidence for follow-up studies
GSE62186
shRNA Sensor Analysis of 5' U converted shRNAs reveals 3' target bias exists in addition to 5' guide bias
GSE62187
An optimized microRNA scaffold increases shRNA processing and target knockdown
Relations
BioProject
PRJNA263389
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Format
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SOFT
MINiML formatted family file(s)
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TXT
Supplementary data files not provided
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