|
| Status |
Public on Jun 30, 2020 |
| Title |
HPV cell lines and HPV tissue MicroRNA SOLiD sequencing |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Human papillomaviruses (HPV) preferentially infect keratinocytes of mucous membranes or skin and cause numerous benign and malignant lesions at different anatomical locations. We sequenced small RNA (sRNA) libraries of two HPV 16 immortalized cell lines and ten formalin fixed paraffin embedded (FFPE) tissue samples from HPV infected cervical epithelium by SOLiD 4 technology.
|
| |
|
| Overall design |
Small RNA (sRNA) libraries of two HPV 16 immortalized cell lines, HPK IA and HPK II, and ten formalin fixed paraffin embedded (FFPE) tissue samples from HPV infected cervical epithelium, were made according to SOLiD sequencing instructions.
|
| |
|
| Contributor(s) |
Qian K, Pietilä T, Paulín L, Auvinen P, Auvinen E |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Oct 10, 2014 |
| Last update date |
Jul 01, 2020 |
| Contact name |
Petri Auvinen |
| Organization name |
University of Helsinki
|
| Lab |
DNA Sequencing and Genomics
|
| Street address |
Viikinkaari 5
|
| City |
Helsinki |
| ZIP/Postal code |
00790 |
| Country |
Finland |
| |
|
| Platforms (1) |
| GPL13393 |
AB SOLiD 4 System (Homo sapiens) |
|
| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA263563 |
| SRA |
SRP048818 |
Less...
More...