|
| Status |
Public on Mar 01, 2015 |
| Title |
Embryonic small RNA and RNA profiles of Tribolium castaneum and Drosophila oocytes |
| Organisms |
Tribolium castaneum; Drosophila melanogaster; Drosophila virilis |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Next generation sequencing analysis of the small RNA and RNA profiles of successive time intervals during T. castaneum embryogenesis, and Drosophila unfertilized oocytes
|
| |
|
| Overall design |
Total RNA was extracted from oocytes precisely staged embryos at 25°C and small RNA or stranded polyA-RNA libraries were generated according to the manufacturer's instructions
|
| |
|
| Contributor(s) |
Ninova M, Griffiths-Jones S, Ronshaugen M |
| Citation(s) |
26518483 |
|
Maria Ninova, Matthew Ronshaugen, Sam Griffiths-Jones. Tribolium castaneum as a model for microRNA evolution, expression and function during short germband development. bioRxiv 22-Apr-2015. http://0-dx-doi-org.brum.beds.ac.uk/10.1101/018424
|
| Submission date |
Dec 02, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Maria Ninova |
| E-mail(s) |
ninova@caltech.edu
|
| Organization name |
Calfironia Institute of Technology
|
| Department |
Division of Biology and Biological Engineering
|
| Street address |
1200 E California Blvd
|
| City |
Pasadena |
| State/province |
CA |
| ZIP/Postal code |
91125 |
| Country |
USA |
| |
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| Platforms (4)
|
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
| GPL13313 |
Illumina HiSeq 2000 (Drosophila virilis) |
| GPL18255 |
Illumina HiSeq 2000 (Tribolium castaneum) |
| GPL19478 |
Illumina MiSeq (Tribolium castaneum) |
|
| Samples (22)
|
|
| Relations |
| BioProject |
PRJNA269044 |
| SRA |
SRP050428 |
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