|
| Status |
Public on Jun 30, 2015 |
| Title |
Affymetrix SNP array data for rhabdomyosarcoma samples |
| Organism |
Homo sapiens |
| Experiment type |
SNP genotyping by SNP array
|
| Summary |
Affymetrix SNP arrays were performed according to the manufacturer's directions on DNA extracted from fresh frozen tissues.
To obtain a profile of copy number alterations in RMS, we studied 65 samples in 60 RMS cases. Other data of 38 samples are deposited in GSE41263:
GSM1528059
GSM1528057
GSM1528061
GSM1528058
GSM1528054
GSM1528060
GSM1012723
GSM1012722
GSM1012746
GSM1528055
GSM1528056
GSM1530028
GSM1012751
GSM1012724
GSM1012726
GSM1012747
GSM1012725
GSM1012716
GSM1012735
GSM1012713
GSM1012736
GSM1012737
GSM1012738
GSM1012730
GSM1012739
GSM1012740
GSM1012750
GSM1012717
GSM1012718
GSM1012719
GSM1012741
GSM1012732
GSM1012715
GSM1012720
GSM1012742
GSM1012721
GSM1012743
GSM1012744
|
| |
|
| Overall design |
Copy number analysis of Affymetrix 250K or Cytoscan_HD SNP arrays was performed for 27 rhabdomyosarcoma samples.
|
| |
|
| Contributor(s) |
Seki M, Nishimura R, Yoshida K, Sato Y, Ogawa S, Takita J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Dec 05, 2014 |
| Last update date |
Jul 13, 2018 |
| Contact name |
Masafumi Seki |
| E-mail(s) |
sepon0628@gmail.com
|
| Phone |
+81-3-5800-8659
|
| Organization name |
The University of Tokyo
|
| Department |
Department of Pediatrics
|
| Street address |
7-3-1, Hongo, Bunkyo-ku
|
| City |
Tokyo |
| State/province |
Tokyo |
| ZIP/Postal code |
113-8655 |
| Country |
Japan |
| |
|
| Platforms (2) |
| GPL3718 |
[Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array |
| GPL16131 |
[CytoScanHD_Array] Affymetrix CytoScan HD Array |
|
| Samples (27)
|
|
| Relations |
| BioProject |
PRJNA269634 |
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