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| Status |
Public on Sep 13, 2016 |
| Title |
Global DNA CpG methylation profiling of human embryonic stem cells, fibroblast iPSC, and low passage stromal primed myeloid iPSC before and after conversion to the naïve state |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by array
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| Summary |
Global DNA CpG methylation profiling of human embryonic stem cells, fibroblast iPSC, and low passage stromal primed myeloid iPSC before and after conversion to the naïve state
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| Overall design |
Total DNA was harvested from indicated donor cells, hESC, or iPSC. A single sample of each cell line was used for this analysis.
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| Contributor(s) |
Zimmerlin L, Park TS, Huo JS, Yu W, Zambidis ET |
| Citation(s) |
27660325, 32139672 |
| Submission date |
Jan 22, 2015 |
| Last update date |
Mar 16, 2020 |
| Contact name |
Elias Thomas Zambidis |
| Organization name |
Johns Hopkins School of Medicine
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| Department |
Oncology
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| Street address |
733 N. Broadway
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| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21205 |
| Country |
USA |
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| Platforms (1) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
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| Samples (24)
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| GSM1589932 |
hESC (H9) p34, P4 after conversion to a naïve state with L3i |
| GSM1589933 |
hESC (H7) p42, P6 after conversion to a naïve state with L3i |
| GSM1589934 |
hESC (ESO3) p87, p7 after conversion to a naïve state with L3i |
| GSM1589935 |
nonviral 7F stromal primed cord blood iPSC clone 6.2 passage 26, p7 after conversion to a naïve state with L3i |
| GSM1589936 |
nonviral 4 factor stromal primed cord blood iPSC clone E5C3 passage 22, p5 after conversion to a naïve state with L3i |
| GSM1589937 |
nonviral 4 factor stromal primed Cord Blood iPSC clone E5C1, passage 27, p4 after conversion to a naïve state with L3i |
| GSM1589938 |
nonviral 4 factor stromal primed cord blood iPSC clone E17C6 passage 27, p4 after conversion to a naïve state with L3i |
| GSM1589939 |
nonviral 4 factor stromal primed cord blood iPSC clone LZ6+2, passage 17, p4 after conversion to a naïve state with L3i |
| GSM1589940 |
nonviral 4 factor stromal primed cord blood iPSC clone LZ6+10 passage 17, p4 after conversion to a naïve state with L3i |
| GSM1589941 |
nonviral 7 factor Adult Fibroblast iPSC clone 7F-C1.2, passage 9, p4 after conversion to a naïve state with L3i |
| GSM1589942 |
nonviral 7 factor Adult Fibroblast iPSC clone 7F-C2, passage 9, p4 after conversion to a naïve state with L3i |
| GSM1589943 |
nonviral 7F fetal fibroblast iPSC clone 6.1, passage 38, p7 after conversion to a naïve state with L3i |
| GSM1589944 |
hESC (H9) p38 |
| GSM1589945 |
hESC (H7) p46 |
| GSM1589946 |
hESC (ESO3) p |
| GSM1589947 |
nonviral 7F stromal primed cord blood iPSC clone 6.2 p18 |
| GSM1589948 |
nonviral 4 factor stromal primed cord blood iPSC clone E5C3 passage 18 |
| GSM1589949 |
nonviral 4 factor stromal primed Cord Blood iPSC clone E5C1, passage 32 |
| GSM1589950 |
nonviral 4 factor stromal primed cord blood iPSC clone E17C6 passage 14 |
| GSM1589951 |
nonviral 4 factor stromal primed cord blood iPSC clone LZ6+2, passage 19 |
| GSM1589952 |
nonviral 4 factor stromal primed cord blood iPSC clone LZ6+10, passage 13 |
| GSM1589953 |
nonviral 7 factor Adult Fibroblast iPSC clone 7F-C1.2, passage 13 |
| GSM1589954 |
nonviral 7 factor Adult Fibroblast iPSC clone 7F-C2, passage 13 |
| GSM1589955 |
nonviral 7F fetal fibroblast iPSC clone 6.1 p23 |
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| This SubSeries is part of SuperSeries: |
| GSE44430 |
Comprehensive microarray analysis of reprogramming fidelity in a library of non-integrated induced pluripotent stem cell lines prepared with various derivation methods |
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| Relations |
| BioProject |
PRJNA273410 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE65214_RAW.tar |
183.1 Mb |
(http)(custom) |
TAR |
| GSE65214_signal_intensities.txt.gz |
56.4 Mb |
(ftp)(http) |
TXT |
| Processed data included within Sample table |
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