|
| Status |
Public on Feb 26, 2015 |
| Title |
Gene expression profiling of patient's DCIS-IDC tandem lesions by RNA sequencing analysis |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Tandem DCIS/IDC are defined as ductal carcicnoma in situ (DCIS) lesions that have concurrent invasive ductal carcinoma (IDC) within the same breast. These are identified radiologically by an area of clustered microcalcifications adjacent to (contiguous with) an invasive mass. Our radiologist (Dr. William P. Smith) has provided us with biopsy cores from each region. One core from each region (DCIS and IDC) has bas been collected and subjected to RNA sequencing for our studies to compare changes from DCIS to IDC in each individual patient.
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| |
|
| Overall design |
6 pairs of DCIS-IDC samples were collected, and analysed by RNA sequencing
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| |
|
| Contributor(s) |
Smith WP, Valdez K, Michaels W, Hook M, Chein J, Behbod F |
| Citation(s) |
31907974 |
| Submission date |
Feb 25, 2015 |
| Last update date |
Jun 10, 2020 |
| Contact name |
Hanan Elsarraj |
| E-mail(s) |
helsarraj@kumc.edu
|
| Organization name |
University of Kansas Medical Center
|
| Department |
Pathology and Laboratory Medicine
|
| Lab |
Fariba Behbod
|
| Street address |
3901 Rainbow Blvd.
|
| City |
Kansas City |
| State/province |
KS |
| ZIP/Postal code |
66160 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA276455 |
| SRA |
SRP055512 |
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