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Series GSE67845 Query DataSets for GSE67845
Status Public on Oct 26, 2015
Title Identification of a potent and selective chemical probe for exploring the role of Mediator complex-associated protein kinases CDK8 and CDK19 in human disease [Colo205]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary There is an unmet need for chemical tools to explore the role of the Mediator complex in human pathologies ranging from cancer to cardiovascular disease. Here we determine that CCT251545
a WNT-pathway inhibitor discovered by cell-based screening
is a potent and selective chemical probe for the Mediator complex-associated protein kinases CDK8 and CDK19. CCT251545 is an ATP competitive inhibitor with >100-fold selectivity over 291 other kinases. X-ray crystallography demonstrates Type 1 binding involving insertion of the CDK8 C-terminus into the ligand binding site. In contrast to Type II inhibitors of CDK8/19
CCT251545 displays potent cell-based activity. We show that CCT251545 and close analogues not only alter WNT-pathway regulated gene expression
but also other CDK8/19 targets including STAT1-regulated gene expression. Consistent with this we find that phospho-STAT1SER727 is a biomarker of CDK8 kinase activity in vitro and in vivo. Finally
we demonstrate in vivo activity of CCT251545 in WNT-dependent tumours.
 
Overall design Colo205 colon cancer cells were treated with 350 nM of Compound 1 or with vehicle (DMSO) for 2 or 6h. Four samples with four biological repeats each. Samples were hybridized against human reference.
Compound 1 is a close analogue of a 3,4,5-trisubstituted pyridine series identified from a high-throughput cell-based reporter assay of WNT signalling. It was shown to be potent and selective inhibitor of the Mediator complex-associated protein kinases CDK8 and CDK19. Its is ATP competitive inhibitor with >100-fold selectivity over 291 other kinases. X-ray crystallography demonstrates Type 1 binding involving insertion of the CDK8 C-terminus into the ligand-binding site.
Web link http://0-www-nature-com.brum.beds.ac.uk/nchembio/journal/vaop/ncurrent/full/nchembio.1952.html#supplementary-information
 
Contributor(s) Dale T, Clarke PA, Esdar C, Waalboer D, Adeniji-Popoola O, Ortiz-Ruiz M, Mallinger A, Samant R, Czodrowski P, Musil D, Schwarz D, Schneider K, Schneider EV, Lammens A, Stubbs M, Ewan K, Fraser E, te Poele RH, Court W, Box G, Valenti M, de Haven Brandon A, Gowan S, Rohdich F, Raynaud F, Schneider R, Poeschke O, Blaukat A, Workman P, Schiemann K, Eccles SA, Wienke D, Blagg J
Citation(s) 26502155
Submission date Apr 14, 2015
Last update date Jan 09, 2018
Contact name Robert te Poele
E-mail(s) robert.te-poele@icr.ac.uk
Phone 00442087224319
Organization name The Institute of Cancer Research
Department Cancer Reserach UK Unit for Cancer Therapeutics
Lab Signal Transduction and Molecular Pharmacology Team
Street address 15 Cotswold Road
City Sutton
State/province Surrey
ZIP/Postal code SM2 5NG
Country United Kingdom
 
Platforms (1)
GPL17077 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
Samples (16)
GSM1657093 COLO205_CPD_1_2H_A
GSM1657094 COLO205_CPD_1_2H_B
GSM1657095 COLO205_CPD_1_2H_C
This SubSeries is part of SuperSeries:
GSE67849 Identification of a potent and selective chemical probe for exploring the role of Mediator complex-associated protein kinases CDK8 and CDK19 in human disease
Relations
BioProject PRJNA281059

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE67845_RAW.tar 337.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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