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Status |
Public on Nov 02, 2015 |
Title |
Next Generation Sequencing Analysis of Wild Type and Rfx2-/- Testicular Transcriptomes [RNA-Seq P30] |
Organism |
Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Purpose: This study was carried out to determine the consequences of the Rfx2-/- genotype on spermatogenesis in the mouse Methods: RNA was extracted from decapsulated testes of 29-30 day old mixed background mice of either genotype. Deep sequencing was used to determine quantitative expression of the genomes from independent replicates of each genotype Results: RNA-Seq analysis identified some 640 genes that are down regulated at least 2-fold in Rfx2-/- testes, with ~150 being reduced at least 10-fold Conclusion: Spermatogenesis undergoes complete arrest just prior to the end of the round spermatid period of sperm development in mutant mice. Sequencing results showed that approximately 640 genes were downregulated 2 fold or more in the testes of mutant mice. Comparison of similar studies of targeted mutations in genes for other transcription factor demonstrate that Rfx2 has a large and nearly unique set of genes that depend on it directly or indirectly. A large number of downregulated genes are identified with cilia function.
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Overall design |
Testicular mRNA profiles were determined by deep sequencing using testes from 5 independent wild type and 4 independent Rfx2-/- mice
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Contributor(s) |
S Kistler W, Baas D, Lemeille S, Paschaki M, Barras E, Ma W, Duteyrat J, Morlé L, Durand B, Reith W |
Citation(s) |
26162102 |
Submission date |
Apr 27, 2015 |
Last update date |
May 15, 2019 |
Contact name |
Sylvain LEMEILLE |
Organization name |
University of Geneva Medical School
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Department |
Department of Pathology and Immunology
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Street address |
1 rue Michel-Servet
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City |
Geneva |
ZIP/Postal code |
1211 |
Country |
Switzerland |
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Platforms (1) |
GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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Samples (9)
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This SubSeries is part of SuperSeries: |
GSE63130 |
Next Generation Sequencing Analysis of Wild Type and Rfx2-/- Testicular Transcriptomes |
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Relations |
SRA |
SRP057696 |
BioProject |
PRJNA282463 |