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Series GSE68555 Query DataSets for GSE68555
Status Public on May 06, 2015
Title caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The incidence of prostate cancer is frequent, occurring in almost one-third of men older than 45 years. Only a fraction of the cases reach the stages displaying clinical significance. Despite the advances in our understanding of prostate carcinogenesis and disease progression, our knowledge of this disease is still fragmented. Identification of the genes and patterns of gene expression will provide a more cohesive picture of prostate cancer biology. PATIENTS AND METHODS: In this study, we performed a comprehensive gene expression analysis on 152 human samples including prostate cancer tissues, prostate tissues adjacent to tumor, and organ donor prostate tissues, obtained from men of various ages, using the Affymetrix (Santa Clara, CA) U95a, U95b, and U95c chip sets (37,777 genes and expression sequence tags). RESULTS: Our results confirm an alteration of gene expression in prostate cancer when comparing with nontumor adjacent prostate tissues. However, our study also indicates that the gene expression pattern in tissues adjacent to cancer is so substantially altered that it resembles a cancer field effect. CONCLUSION: We also found that gene expression patterns can be used to predict the aggressiveness of prostate cancer using a novel model.
 
Overall design becic-00235
Assay Type: Gene Expression
Provider: Affymetrix
Array Designs: HG_U95A, HG_U95Av2, HG_U95B, HG_U95C
Organism: Homo sapiens (ncbitax)
Material Types: synthetic_RNA, organism_part, whole_organism, total_RNA
Disease States: Normal, Prostate_Adenocarcinoma
 
Citation(s) 15254046
Submission date May 05, 2015
Last update date Dec 13, 2018
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platforms (4)
GPL91 [HG_U95A] Affymetrix Human Genome U95A Array
GPL92 [HG_U95B] Affymetrix Human Genome U95B Array
GPL93 [HG_U95C] Affymetrix Human Genome U95C Array
Samples (444)
GSM1675048 becic-00235: PN100: HG_U95AV2
GSM1675049 becic-00235: PN100: HG_U95B
GSM1675050 becic-00235: PN100: HG_U95C
Relations
BioProject PRJNA283113

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68555_RAW.tar 3.0 Gb (http)(custom) TAR (of CEL, CHP, TXT)
GSE68555_caArray_becic-00235.tar.gz 7.2 Mb (ftp)(http) TAR
Processed data included within Sample table
Processed data provided as supplementary file

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