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| Status |
Public on Jun 18, 2015 |
| Title |
Genome wide DNA methylation profiling of normal breast, normal adjacent and breast cancer tissue |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
|
| Summary |
The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 480,000 CpGs in a total of 407 samples, including 50 normal samples from healthy women, 42 matched normal-adjacent breast cancer pairs (84 samples), 263 unmatched breast cancers, 7 normal samples from BRCA1 carriers and 4 BRCA1 breast cancers.
***WARNING: incomplete metadata supplied for this study***
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| |
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| Overall design |
Bisulphite converted DNA from the 407 samples were hybridised to the Illumina Infinium 450k Human Methylation Beadchip
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| |
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| Contributor(s) |
Teschendorff A, Widschwendter M |
| Citation(s) |
26664652, 26823093, 29735413, 26169266, 27103033 |
| Submission date |
Jun 16, 2015 |
| Last update date |
Oct 04, 2019 |
| Contact name |
Andrew E Teschendorff |
| E-mail(s) |
a.teschendorff@ucl.ac.uk
|
| Phone |
+44 02076790727
|
| Organization name |
University College London
|
| Department |
UCL Cancer Institute/Institute for Women's Health
|
| Street address |
72 Huntley Street
|
| City |
London |
| ZIP/Postal code |
WC1E 6BT |
| Country |
United Kingdom |
| |
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| Platforms (1) |
| GPL16304 |
Illumina HumanMethylation450 BeadChip [UBC enhanced annotation v1.0] |
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| Samples (407)
|
|
| Relations |
| BioProject |
PRJNA287264 |
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