|
| Status |
Public on Jun 30, 2016 |
| Title |
Human and mouse DRIP-seq and DRIPc-seq |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Other
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
This study profiles RNA:DNA hybrid formation in human and mouse cell lines.
|
| |
|
| Overall design |
DRIPc-seq (strand-specific R-loop mapping) was performed on human NT2 cells and mouse 3T3 cells. DRIP-seq (R-loop mapping) was performed on human NT2 and K562 and mouse E14 and 3T3 cell lines. MethylC-seq and RNA-seq were performed on NT2.
|
| |
|
| Contributor(s) |
Sanz LA, Lim Y, Hartono SR, Rajpurkar AR, Chedin F |
| Citation(s) |
27373332, 31053798 |
| Submission date |
Jun 23, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Yoong Wearn Lim |
| E-mail(s) |
ywlim@ucdavis.edu
|
| Organization name |
University of California, Davis
|
| Department |
Molecular and Cellular Biology
|
| Lab |
Chedin
|
| Street address |
One Shields Avenue
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (13)
|
|
| Relations |
| BioProject |
PRJNA287823 |
| SRA |
SRP059800 |
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