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Series GSE7050 Query DataSets for GSE7050
Status Public on Feb 17, 2007
Title Stabilization of b-catenin induces lymphomas
Organism Mus musculus
Experiment type Expression profiling by array
Summary Activation of b-catenin has been causatively linked to the etiology of colon cancer. Conditional stabilization of this molecule in pro-T-cells promotes thymocyte development without the requirement for preTCR signaling. We show here that activated b-catenin stalls the developmental transition from the double-positive (DP) to the single-positive (SP) thymocyte stage and predisposes DP thymocytes to transformation. b-Catenin induced thymic lymphomas have a leukemic arrest at the early DP stage. Lymphomagenesis requires Rag activity, which peaks at this developmental stage, as well as additional secondary genetic events. A consistent secondary event is the transcriptional upregulation of c-Myc, whose activity is required for transformation since its conditional ablation abrogates lymphomagenesis. In contrast, the expression of Notch receptors as well as targets is reduced in DP thymocytes with stabilized b-catenin and remains low in the lymphomas indicating that Notch activation is not required or selected for in b-catenin induced lymphomas. Thus, b-catenin activation may provide a mechanism for the induction of T-ALL that does not depend on Notch activation.
Keywords: Lckcre, CD4Cre-Ctnnbex3, lymphoma, gene expression
 
Overall design This study was used to compare gene expression patterns of LckCre mice, CD4Cre-Ctnnbex3 mice before and after T-cell transformation. 5 independent Lckcre (control), 5 independent CD4Cre-Ctnnbex3 mice and 8 independent mice with lymphomas were used. Thymocytes or tumor masses were collected from Lckcre, CD4Cre-Ctnnbex3 mice. Total RNA isolation and purification followed by synthesis of dscDNA, Biotinylated cRNA and purification of Biotinylated cRNA. Then the hybridization to Affymetrix “Mouse Expression Array 430 Genechips” was done. Data was analysed by dchip.
 
Contributor(s) Guo Z, Dose M, Kovalovsky D, Chang R, O'Neil J, Look T, von Boehmer H, Khazaie K, Gounari F
Citation(s) 17317856, 24574339
Submission date Feb 16, 2007
Last update date Feb 11, 2019
Contact name Fotini Gounari
E-mail(s) fgounari@tufts-nemc.org
Organization name Tufts-New England Medical Center
Department molecular oncology research institute
Lab Fotini Gounari
Street address 75 Kneeland, 12th floor
City Boston
State/province MA
ZIP/Postal code 02111
Country USA
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (18)
GSM161514 thymus_lymphoma3
GSM161515 thymus_lymphoma4
GSM161516 thymus_lymphoma5
Relations
BioProject PRJNA98513

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE7050_RAW.tar 112.5 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file

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