NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE71137 Query DataSets for GSE71137
Status Public on Jul 22, 2015
Title Genome-wide measurement of spatial expression in mutants of Drosophila Melanogaster
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced mRNA from transverse slices of embryos from a variety of D. melanogaster mutants (bicoid over-expression, bicoid knockdown, hunchback knocdown, and zelda mutant) at the blastoderm stage to determine genome-wide patterns of gene expression.
 
Overall design mRNA from transverse sections of single D. melanogaster embryos mutant for patterning TFs was sequenced.
 
Contributor(s) Combs PA, Eisen MB
Citation(s) 28299188
Submission date Jul 21, 2015
Last update date May 15, 2019
Contact name Peter Acuña Combs
E-mail(s) pcombs@stanford.edu
Organization name Stanford University
Department Biology
Lab Hunter Fraser
Street address Gilbert Rm 309, 371 Serra Mall
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (382)
GSM1828009 bcd_cyc13_rep1_sl01
GSM1828010 bcd_cyc13_rep1_sl02
GSM1828011 bcd_cyc13_rep1_sl03
Relations
BioProject PRJNA290441
SRA SRP061361

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE71137_summary.cufflinks.tsv.gz 7.3 Mb (ftp)(http) TSV
GSE71137_summary.kallisto.tsv.gz 12.1 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap