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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Aug 13, 2015 |
| Title |
Interspecies Comparative Genomics Identifies Optimal Mouse Models of Scleroderma (bleoskin) |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
Systemic sclerosis (SSc) is confounded by considerable disease heterogeneity. Animal models of SSc that recapitulate distinct subsets of disease at the molecular level have not delineated. We applied interspecies comparative analysis of genomic data from multiple mouse models of SSc and patients with SSc to determine which animal models best reflect the SSc intrinsic gene expression subsets.
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| Overall design |
Gene expression measured in skin from mice with sclerodermatous graft-versus-host disease, bleomycin-induced fibrosis, or Tsk1/+ and Tsk2/+ mice was mapped to human orthologs and compared to SSc skin biopsy-derived gene expression.
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| Contributor(s) |
Sargent J, Li Z |
| Citation(s) |
26945694 |
| Submission date |
Aug 12, 2015 |
| Last update date |
Jan 12, 2017 |
| Contact name |
Michael Whitfield |
| Phone |
6036501105
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| Organization name |
Geisel School of Medicine at Dartmouth
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| Department |
Genetics
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| Street address |
710 Remsen 74 College Street
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| City |
Hanover |
| State/province |
New Hampshire |
| ZIP/Postal code |
03755 |
| Country |
USA |
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| Platforms (1) |
| GPL7202 |
Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version) |
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| Samples (20)
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| GSM1849519 |
B143_PBS_5d_bleoskin, PBS treated |
| GSM1849520 |
B144_PBS_5d_bleoskin, PBS treated |
| GSM1849521 |
B150_PBS_21d_bleoskin, PBS treated |
| GSM1849522 |
B151_PBS_21d_bleoskin, PBS treated |
| GSM1849523 |
B152_PBS_21d_bleoskin, PBS treated |
| GSM1849524 |
B153_PBS_21d_bleoskin, PBS treated |
| GSM1849525 |
B154_PBS_21d_bleoskin, PBS treated |
| GSM1849526 |
B145_bleo_5d_bleoskin, bleomycin treated |
| GSM1849527 |
B146_bleo_5d_bleoskin, bleomycin treated |
| GSM1849528 |
B148_bleo_5d_bleoskin, bleomycin treated |
| GSM1849529 |
B149a_bleo_5d_bleoskin, bleomycin treated |
| GSM1849530 |
B149_bleo_5d_bleoskin, bleomycin treated |
| GSM1849531 |
B155_bleo_21d_bleoskin, bleomycin treated |
| GSM1849532 |
B156_bleo_21d_bleoskin, bleomycin treated |
| GSM1849533 |
B157_bleo_21d_bleoskin, bleomycin treated |
| GSM1849534 |
B158_bleo_21d_bleoskin, bleomycin treated |
| GSM1849535 |
B159_bleo_21d_bleoskin, bleomycin treated |
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| This SubSeries is part of SuperSeries: |
| GSE71999 |
Interspecies Comparative Genomics Identifies Optimal Mouse Models of Scleroderma |
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| Relations |
| BioProject |
PRJNA292695 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE71998_RAW.tar |
152.3 Mb |
(http)(custom) |
TAR (of GPR, XLS) |
| Processed data included within Sample table |
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