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Series GSE72135 Query DataSets for GSE72135
Status Public on Aug 18, 2015
Title Expression data from hyperoxaluric rats
Platform organism synthetic construct
Sample organism Rattus norvegicus
Experiment type Expression profiling by array
Summary Calcium oxalate stones account for over 80% of urinary stones, while the molecular mechanism of its formation is still not completely elucidated. The incidence of hyperoxaluria in calcium oxalate stone formation ranks only second to hypercalciuria. It plays an important role in the pathophysiological process of stone formation. We analyzed miRNA expression profiles between experimental hyperoxaluric rats and normal rats in order to find out the target genes and signaling pathways in the pathogenesis of hyperoxaluria.
 
Overall design We feed ethylene glycol (EG) and ammonium chloride (AC) to male experimental hyperoxaluric rats (T group) and age-matched male rats selected as control group (C group). The oxalate concentration in 24-hour urine of each experimental rat was measured and the three highest were selected for microarray test. MicroRNA microarray was applied to evaluate the expression difference between the two groups and screen miRNA that were above 2- or below 0.5-fold change.
 
Contributor(s) Jiang H, Liu Z
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Submission date Aug 18, 2015
Last update date May 02, 2017
Contact name Jiang Hongyang
E-mail(s) jiang.hongyang@163.com
Organization name Tongji Hospital, Huazhong University of Science and Technology
Street address No. 1095 Jie Fang Avenue
City Wuhan
State/province Hubei
ZIP/Postal code 430000
Country China
 
Platforms (1)
GPL19117 [miRNA-4] Affymetrix Multispecies miRNA-4 Array
Samples (6)
GSM1855886 rat at T1, biological rep1
GSM1855887 rat at T2, biological rep1
GSM1855888 rat at T3, biological rep1
Relations
BioProject PRJNA293162

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72135_RAW.tar 4.5 Mb (http)(custom) TAR (of CEL)
GSE72135_normalized_data_full.txt.gz 2.7 Mb (ftp)(http) TXT
GSE72135_normalized_data_sig.txt.gz 106.5 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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