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Series GSE72673 Query DataSets for GSE72673
Status Public on Dec 08, 2015
Title Targeting the EWS/ETS transcriptional program by BET bromodomain inhibition in Ewing sarcoma
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Ewing sarcomas (ES) are highly malignant, osteolytic bone or soft tissue tumors, which are characterized by early metastasis into lung and bone. Genetically, ES are defined by balanced chromosomal EWS/ETS translocations, which give rise to chimeric proteins (EWS-ETS) that generate an oncogenic transcriptional program associated with altered epigenetic marks throughout the genome. By use of an inhibitor (JQ1) blocking BET bromodomain binding proteins (BRDs) we strikingly observed a strong down-regulation of the predominant EWS-ETS protein EWS/FLI1 in a dose dependent manner. Microarray analysis further revealed JQ1 treatment to block a typical ES associated expression program. The effect on this expression program could be mimicked by RNA interference with BRD3 or BRD4 expression, indicating that the EWS/FLI1 mediated expression profile is at least in part mediated via such epigenetic readers. Consequently, contact dependent and independent proliferation of different ES lines was strongly inhibited. Mechanistically, treatment of ES resulted in a partial arrest of the cell cycle as well as induction of apoptosis. Tumor development was suppressed dose dependently in a xeno-transplant model in immune deficient mice, overall indicating that ES may be susceptible to treatment with epigenetic inhibitors blocking BET bromodomain activity and the associated pathognomonic EWS-ETS transcriptional program in ES.
 
Overall design Ewing sarcoma cell lines A673 and TC-71 were treated for 48 hours with 2 microM JQ1 or DMSO control.
 
Contributor(s) Hensel T, Giorgi C, Schmidt O, Buch T, Burdach S, Schäfer B, Richter GH
Citation(s) 26623725
Submission date Sep 02, 2015
Last update date Jul 26, 2018
Contact name Guenther HS Richter
E-mail(s) guenther.richter@charite.de
Organization name Charité - Universitätsmedizin Berlin
Department Department of Pediatrics, Division of Oncology and Hematology
Street address Augustenburger Platz 1
City Berlin
ZIP/Postal code D-13353
Country Germany
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (4)
GSM1867974 TC-71 DMSO
GSM1867975 TC-71 JQ1
GSM1867976 A673 DMSO
Relations
BioProject PRJNA294622

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72673_RAW.tar 18.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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