NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE7314 Query DataSets for GSE7314
Status Public on Sep 30, 2007
Title Expression data from non-infected and Salmonella Choleraesuis infected mesenteric lymph nodes
Organism Sus scrofa
Experiment type Expression profiling by array
Summary To understand the host transcriptional response to S. enterica serovar Choleraesuis (S. Choleraesuis), the first generation Affymetrix porcine GeneChip® was used to identify differentially expressed genes in the mesenteric lymph nodes responding to infection at acute (8 hours (h), 24h, 48h post-inoculation (pi)) and chronic stages (21 days (d) pi)
The objectives of this study were to identify and examine the stereotypical gene expression response within the host mesenteric lymph nodes to S. Choleraesuis infection, and to characterize the global host responses by revealing the specific features of the host’s innate immunity.
Keywords: time course
 
Overall design Fifteen piglets from Salmonella spp.-free sows were weaned at 10 days (d) of age, shipped to the National Animal Disease Center, Ames, IA and raised in isolation facilities. To confirm that all piglets were free of Salmonella spp. prior to challenge, bacteriological cultures were performed on rectal swabs twice. Seven week old pigs were randomly divided into 2 groups, 3 non-infected pigs and 12 infected pigs. Three non-infected control pigs were necropsied 3 days prior to experimental infection. On day 0, pigs in the infected groups were intranasally challenged with 1 billion CFU of Salmonella enterica serotype Choleraesuis x3246. Three infected pigs were necropsied at 8 hours post-inoculation (hpi), 24 hpi, 48 hpi and 21 day post-inoculation (dpi). Tissue samples from the mesenteric lymph nodes (MLN) were collected and immediately frozen in liquid nitrogen for RNA isolation.
 
Contributor(s) Wang Y, Qu L, Uthe JJ, Bearson SM, Kuhar D, Lunney JK, Couture OP, Nettleton D, Dekkers JC, Tuggle CK
Citation(s) 18811943
Submission date Mar 19, 2007
Last update date Jun 17, 2017
Contact name Christopher K Tuggle
E-mail(s) cktuggle@iastate.edu
Phone 515-294-4252
Fax 515-294-2401
URL http://www.public.iastate.edu/~ans/faculty/tuggle.html
Organization name Iowa State University
Department Animal Science
Lab Molecular Genetics
Street address 2255 Kildee Hall
City Ames
State/province IA
ZIP/Postal code 50011
Country USA
 
Platforms (1)
GPL3533 [Porcine] Affymetrix Porcine Genome Array
Samples (15)
GSM176551 MLN_SC non_infected pig, rep1
GSM176552 MLN_SC non_infected pig, rep2
GSM176553 MLN_SC non_infected pig, rep3
Relations
BioProject PRJNA97971

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE7314_RAW.tar 50.4 Mb (http)(custom) TAR (of CEL, EXP)

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap