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Series GSE75475 Query DataSets for GSE75475
Status Public on Nov 23, 2016
Title Circadian Homeostasis of Liver Metabolism Suppresses Hepatocarcinogenesis
Organism Mus musculus
Experiment type Expression profiling by array
Summary Chronic jet lag induces spontaneous hepatocellular carcinoma (HCC) in wild-type mice following a pathophysiological pathway very similar to that observed in obese humans. This process initiates with non-alcoholic fatty liver disease (NAFLD), progresses to steatohepatitis and fibrosis before HCC detection, and is driven by persistent genome-wide gene deregulation that induces global liver metabolic dysfunction. Nuclear receptor-controlled cholesterol/bile acid and xenobiotic metabolism are found among top deregulated pathways. Ablation of the bile acid receptor FXR dramatically increases intrahepatic bile acid levels and jet-lag-induced HCC, while loss of CAR, a well-known liver tumor promoter, inhibits NAFLD-induced hepatocarcinogenesis. Circadian disruption activates CAR by promoting cholestasis, peripheral clock disruption, and sympathetic dysfunction. Thus, FXR and CAR are clock-controlled therapeutic targets for spontaneous HCC
 
Overall design Male C57BL/6 inbred Wild-type (WT) mice were single-housed and kept either in steady 12hr light/12hr dark cycles (NS) or subjected to chronic jet-lag (CJ) from 4 weeks of age between two time zones different at the time of light onset for 8 hours. Total liver RNA was isolated from control (NS) and jet-lagged (CJ) mice of 12 and 30 weeks of age at ZT2, 10 and 18 (ZT: Zeitgeber time with light on at ZT0 and off at ZT12), snap-frozen, and used for an Agilent array. Data obtained was analyzed using the Limma Bioconductor package after normalization and batch effect removal.
 
Contributor(s) Fu L, Kettner NM, Voicu H, Moore DD
Citation(s) 27889186
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 CA137019 The Study of the Circadian Rhythm in p53 Signaling BAYLOR COLLEGE OF MEDICINE Fu
Submission date Nov 30, 2015
Last update date Jul 19, 2017
Contact name Loning Fu
E-mail(s) loningf@bcm.edu
Phone 7137980932
Organization name Baylor College of Medicine
Department Medicine
Lab Alkek N720
Street address One Baylor Plaza
City Houston
State/province Texas
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL13912 Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Feature Number version)
Samples (32)
GSM1955659 Liver_NS Wt ZT2 12wk_mouse1
GSM1955660 Liver_NS Wt ZT2 12wk_mouse2
GSM1955661 Liver_CJ Wt ZT2 12wk_mouse1
Relations
BioProject PRJNA304388

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE75475_RAW.tar 109.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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