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Series GSE75977 Query DataSets for GSE75977
Status Public on Feb 13, 2017
Title Retinoic acid specifically enhances embryonic stem cell metastate marked by Zscan4
Organism Mus musculus
Experiment type Expression profiling by array
Summary Pluripotency confers Embryonic Stem Cells (ESCs) the ability to differentiate in ectoderm, endoderm, and mesoderm derivatives, producing the majority of cell types. Although the majority of ESCs divide without losing pluripotency, it has become evident that ESCs culture consists of multiple cell populations with different degrees of potency that are spontaneously induced in regular ESC culture conditions. Zscan4, a key pluripotency factor, marks ESC subpopulation that is referred to as high-level of pluripotency metastate. Here, we report that in ESC cultures treated with retinoic acid (RA), Zscan4 ESCs metastate is strongly enhanced. In particular, we found that induction of Zscan4 metastate is mediated via RA receptors (RAR-alpha, RAR-beta, and RAR-gamma), and it is dependent on phosphoinositide-3-kinase (PI3K) signaling. Remarkably, Zscan4 metastate induced by RA lacks canonical pluripotency genes Oct3/4 and Nanog but retained both self-renewal and pluripotency capabilities. Finally we demonstrated that the conditional ablation of Zscan4 subpopulation is dispensable for both endoderm and mesoderm but is required for ectoderm lineage. In conclusion, our research provides new insights about the role of RA signaling during ESCs high pluripotency metastate fluctuation.
 
Overall design emeral+/-, retinoic acid cell sorting
 
Contributor(s) Falco G, Ko M
Citation(s) 26840068
Submission date Dec 14, 2015
Last update date Feb 13, 2017
Contact name Minoru S.H. Ko
E-mail(s) kom@mail.nih.gov
Phone 410-558-8359
Organization name NIH
Department National Institute on Aging
Lab Lab of Genetics
Street address 251 Bayview Blvd, Suite 100, 10C
City Baltimore
State/province MD
ZIP/Postal code 21224
Country USA
 
Platforms (1)
GPL4358 NIA Mouse 44K Microarray v2.2 (Whole Genome 60-mer Oligo)
Samples (8)
GSM1971401 Zscan4_Emerald+ Replicate 1
GSM1971402 Zscan4_Emerald+ Replicate 2
GSM1971403 Zscan4_Emerald+ Replicate 3
Relations
BioProject PRJNA305888

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE75977_RAW.tar 79.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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