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Series GSE7770 Query DataSets for GSE7770
Status Public on May 18, 2007
Title Gene expression in thymic CD4 T cells: effects of Foxp3
Organism Mus musculus
Experiment type Expression profiling by array
Summary This data set is comprised of all thymic T cell subsets presented in this manuscript. These include T-N, T-25, T-FN and T-R thymocytes.
Keywords: cell type comparison, development
 
Overall design Detailed methods are presented in the manuscript and in the attached Supplementary Information. All RNA samples were derived from cells immediately after isolation from mice. Note that these samples were amplified and labeled with Affymetrix and Enzo reagents, while peripheral T cell samples were amplified and labeled with Ambion reagents.
 
Contributor(s) Gavin MA, Rasmussen JP, Fontenot JD, Vasta V, Manganiello VC, Beavo JA, Rudensky AY
Citation(s) 17220874
Submission date May 09, 2007
Last update date Feb 11, 2019
Contact name Alexander Rudensky
Organization name University of Washington
Department Immunology
Street address 1959 Pacific St
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (4)
GSM188246 GFP- CD25- CD4+ CD8- thymocytes from Foxp3(gfp/gfp) mice
GSM188247 GFP- CD25+ CD4+ CD8- thymocytes from Foxp3(gfp/gfp) mice
GSM188248 GFP+ CD4+ CD8- thymocytes from Foxp3(gfpko/wt) mice
This SubSeries is part of SuperSeries:
GSE7773 Foxp3-dependent programme of regulatory T-cell differentiation
Relations
BioProject PRJNA105489

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE7770_RAW.tar 13.6 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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