|
| Status |
Public on Jul 20, 2017 |
| Title |
Gene and retrotransposon expression analysis in the F1 hybrid background of B6 and MSM for WT, Pld6 KO, and Dnmt3l KO male germ cells |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
mRNA sequencing analysis of FACS-purified leptotene/zygotene (L/Z) spermatocytes
|
| |
|
| Overall design |
Compare transcriptomes of WT, Pld6 KO, and Dnmt3l KO germ cells in the F1 hybrid background of B6 and MSM to study these mutations affecting gene expression due to nearby retrotransposons.
|
| |
|
| Contributor(s) |
Inoue K, Ichiyanagi K |
| Citation(s) |
28749988 |
| Submission date |
Mar 04, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Kota Inoue |
| E-mail(s) |
inoue@bioreg.kyushu-u.ac.jp
|
| Phone |
+8192-642-6760
|
| Organization name |
Kyushu University
|
| Department |
Medical Institute of Bioregulation
|
| Lab |
Division of Epigenomics and Development
|
| Street address |
3-1-1 Maidashi, Higashiku
|
| City |
Fukuoka |
| ZIP/Postal code |
812-8582 |
| Country |
Japan |
| |
|
| Platforms (1) |
| GPL18480 |
Illumina HiSeq 1500 (Mus musculus) |
|
| Samples (4)
|
|
| This SubSeries is part of SuperSeries: |
| GSE70891 |
The effect of the Pld6 and Dnmt3l mutations on DNA methylation and expression of retrotransposons in mouse male germ cells |
|
| Relations |
| BioProject |
PRJNA314334 |
| SRA |
SRP071148 |
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