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Series GSE79368 Query DataSets for GSE79368
Status Public on Mar 19, 2016
Title Pretreatment microRNA Expression Impacting on Epithelial-to-Mesenchymal Transition Predicts Intrinsic Radiosensitivity in Head and Neck Cancer Cell Lines and Patients [mRNA expression]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Purpose: Predominant causes of head and neck cancer recurrence after radiotherapy are rapid repopulation, hypoxia, fraction of cancer stem cells and intrinsic radioresistance. Currently, intrinsic radioresistance can only be assessed by ex-vivo colony assays. Besides being time-consuming, colony assays do not identify causes of intrinsic resistance. We aimed to identify a biomarker for intrinsic radioresistance to be used before start of treatment and to reveal biological processes that could be targeted to overcome intrinsic resistance.
Experimental design: We analyzed both micro- and messenger RNA expression in a large panel of HNSCC cell lines. Expression was measured on both irradiated and unirradiated samples. Results were validated using modified cell lines and a series of laryngeal cancer patients.
Results: MiRs, mRNAs and gene sets that correlated with resistance could be identified from expression data of unirradiated cells. The presence of epithelial to mesenchymal transition (EMT) and low expression of miRs involved in the inhibition of EMT were important radioresistance determinants. This finding was validated in two independent cell line pairs, in which the induction of EMT reduced radiosensitivity. Moreover, low expression of the most important miR (miR-203) was shown to correlate with local disease recurrence after radiotherapy in a series of laryngeal cancer patients.
Conclusions: These findings indicate that EMT and low expression of EMT-inhibiting miRs, especially miR-203, measured in pre-treatment material, causes intrinsic radioresistance of HNSCC, which could enable identification and treatment modification of radioresistant tumors.
 
Overall design 32 HNSCC cell lines from different subsites, 3 timepoints (mock irradiated, 2 hours after 4 Gy and 6 hours after 4 Gy)
All cell lines were obtained from Professor R. Grénman (University of Turku, Finland), who has a panel of well characterized HNSCC cell lines with known radiosensitivity.
 
Contributor(s) de Jong MC, tenHoeve JJ, Grénman R, Wessels LF, Kerkhoven R, te Riele H, van den Brekel MW, Verheij M, Begg AC
Citation(s) 26265694
Submission date Mar 18, 2016
Last update date Feb 18, 2019
Contact name Monique C. de Jong
E-mail(s) m.d.jong@nki.nl
Organization name Netherlands Cancer Institute
Department Dept of Biological Stress Response and Dept. of Radiation Oncology
Street address Plesmanlaan 121
City Amsterdam
ZIP/Postal code 1066 CX
Country Netherlands
 
Platforms (1)
GPL6884 Illumina HumanWG-6 v3.0 expression beadchip
Samples (96)
GSM2093370 UT-SCC-12-[Mock irradiated]
GSM2093371 UT-SCC-15-[Mock irradiated]
GSM2093372 UT-SCC-16A-[Mock irradiated]
This SubSeries is part of SuperSeries:
GSE79372 Pretreatment microRNA Expression Impacting on Epithelial-to-Mesenchymal Transition Predicts Intrinsic Radiosensitivity in Head and Neck Cancer Cell Lines and Patients
Relations
BioProject PRJNA315633

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79368_RAW.tar 6.3 Mb (http)(custom) TAR
GSE79368_non_normalized.txt.gz 26.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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