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Series GSE79508 Query DataSets for GSE79508
Status Public on Aug 04, 2016
Title Cathepsin B modulates lysosomal biogenesis and host defense against Francisella novicida infection
Organism Mus musculus
Experiment type Expression profiling by array
Summary Lysosomal cathepsins regulate an exquisite range of biological functions, and their deregulation is associated with inflammatory, metabolic and degenerative disease in humans. Here, we identified a key cell-intrinsic role for cathepsin B as a negative feedback regulator of lysosomal biogenesis and autophagy. Mice and macrophages lacking cathepsin B activity had increased resistance to the cytosolic bacterial pathogen Francisella novicida. Genetic deletion or pharmacological inhibition of cathepsin B downregulated mTOR activity and prevented cleavage of the lysosomal calcium channel TRPML1. These events drove transcription of lysosomal and autophagy genes via the transcription factor TFEB, which increased lysosomal biogenesis and activation of autophagy-initiation kinase ULK1 for clearance of the bacteria. Our results identified a fundamental biological function of cathepsin B in providing a checkpoint for homeostatic maintenance of lysosome population and basic recycling functions in the cell.
 
Overall design We used microarrays to explore the gene expression profiles differentially expressed in bone marrow-derived macrophages (BMDM) isolated from cathepsin B-/- and wild-type mice.
 
Contributor(s) Man SM, Neale G, Qi X, Malireddi RK, Karki R, Lupfer C, Gurung P, Guy C, Lamkanfi M, Kanneganti TD
Citation(s) 27551156
Submission date Mar 22, 2016
Last update date Feb 21, 2018
Contact name Geoffrey Neale
E-mail(s) geoffrey.neale@stjude.org
Organization name St Jude Childrens Research Hospital
Department Hartwell Center
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL16570 [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [transcript (gene) version]
Samples (4)
GSM2096458 Wild-type BMDM, rep 1
GSM2096459 Wild-type BMDM, rep 2
GSM2096460 Cathepsin B-/- BMDM, rep 1
Relations
BioProject PRJNA316012

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Supplementary file Size Download File type/resource
GSE79508_RAW.tar 36.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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