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Series GSE79550 Query DataSets for GSE79550
Status Public on Apr 04, 2016
Title mRNA sequence data from anterior ovarioles of w1118 virgin females of Drosophila melanogaster
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary Transcriptional profiling of anterior ovarioles (germaria and round previtellogenic egg chambers) of w1118 virgin females of Drosophila melanogaster 1 to 8 days post eclosion.
 
Overall design Anterior ovarioles were dissected from w1118 virgin females 1 to 8 days post eclosion. Three independent biological replicates were prepared for each day. Total RNA was isolated from the samples and used for the generation of multiplexed stranded PolyA+ libraries. External RNA controls were added to ovarian polyA+ RNA during library preparation. 76bp single end libraries were sequenced by Illumina Hiseq 2000.
 
Contributor(s) Sultana H, Yang H, Oliver B
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 23, 2016
Last update date May 15, 2019
Contact name Brian Oliver
E-mail(s) briano@nih.gov
Phone 301-204-9463
Organization name NIDDK, NIH
Department LBG
Lab Developmental Genomics
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (22)
GSM2097801 Anterior_ovariole_Day5_Replicate1
GSM2097802 Anterior_ovariole_Day5_Replicate2
GSM2097803 Anterior_ovariole_Day5_Replicate3
Relations
BioProject PRJNA316143
SRA SRP072244

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79550_RAW.tar 1.5 Mb (http)(custom) TAR (of TXT)
GSE79550_dmel_6.07_ERCC.gtf.gz 4.0 Mb (ftp)(http) GTF
GSE79550_merged.hisat2_htseq_read_count.txt.gz 241.2 Kb (ftp)(http) TXT
GSE79550_merged.hisat2_htseq_read_count_2.txt.gz 209.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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