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| Status |
Public on May 20, 2016 |
| Title |
Transcriptome data of multiple sclerosis patients receiving fingolimod therapy [HTA-2_0, CD56+ cells, gene level] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
We analyzed the gene expression patterns of different blood cell types before and during fingolimod treatment in a group of patients with relapsing-remitting multiple sclerosis (RRMS).
Affymetrix Human Transcriptome Arrays (HTA) 2.0 were used to obtain gene expression profiles of immune cell populations from 10 RRMS patients within the first 3 months of fingolimod treatment.
This GEO entry provides the Affymetrix HTA 2.0 microarray data of peripheral blood CD56+ cells, preprocessed according to the gene level workflow.
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| Overall design |
EDTA blood samples were taken from all patients immediately before first and second fingolimod administration as well as after 3 months of therapy.
Total RNA of CD56+ cells positively selected from each blood sample was extracted, labeled and hybridized to high-density Affymetrix HTA 2.0 microarrays to quantify the transcript levels.
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| Contributor(s) |
Hecker M, Koczan D, Zettl UK |
| Citation(s) |
29314605, 30040082 |
| Submission date |
May 18, 2016 |
| Last update date |
Oct 29, 2018 |
| Contact name |
Michael Hecker |
| E-mail(s) |
michael.hecker@rocketmail.com
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| Organization name |
University of Rostock
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| Department |
Department of Neurology
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| Lab |
Division of Neuroimmunology
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| Street address |
Gehlsheimer Str. 20
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| City |
Rostock |
| ZIP/Postal code |
18147 |
| Country |
Germany |
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| Platforms (1) |
| GPL17586 |
[HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version] |
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| Samples (30)
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| GSM2159232 |
Patient 1, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159233 |
Patient 1, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159234 |
Patient 1, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
| GSM2159236 |
Patient 2, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159237 |
Patient 2, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159239 |
Patient 2, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
| GSM2159241 |
Patient 3, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159242 |
Patient 3, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159244 |
Patient 3, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
| GSM2159246 |
Patient 4, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159247 |
Patient 4, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159249 |
Patient 4, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
| GSM2159250 |
Patient 5, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159252 |
Patient 5, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159253 |
Patient 5, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
| GSM2159255 |
Patient 6, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159257 |
Patient 6, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159259 |
Patient 6, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
| GSM2159260 |
Patient 7, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159262 |
Patient 7, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159264 |
Patient 7, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
| GSM2159265 |
Patient 8, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159267 |
Patient 8, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159268 |
Patient 8, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
| GSM2159270 |
Patient 9, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159272 |
Patient 9, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159273 |
Patient 9, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
| GSM2159275 |
Patient 10, CD56+ cells, before first dose of fingolimod [gene-level] |
| GSM2159276 |
Patient 10, CD56+ cells, before second dose of fingolimod [gene-level] |
| GSM2159278 |
Patient 10, CD56+ cells, after 3 months of fingolimod treatment [gene-level] |
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| This SubSeries is part of SuperSeries: |
| GSE73174 |
Transcriptome data of multiple sclerosis patients receiving fingolimod therapy |
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| Relations |
| BioProject |
PRJNA322148 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE81607_RAW.tar |
657.6 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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