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| Status |
Public on Sep 18, 2017 |
| Title |
An NF-κB-dependent, lineage-specific transcriptional program regulates Treg identity and function |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
28889947 |
| Submission date |
Sep 18, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Hyunju Oh |
| E-mail(s) |
cat.kami@gmail.com
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| Organization name |
Columbia University Medical Center
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| Department |
Microbiology and Immunology
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| Lab |
HHSC building, Room 1204
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| Street address |
701 West 168th Street
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10032 |
| Country |
USA |
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| Platforms (2) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
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| Samples (35)
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| GSM2183168 |
p65KO Treg rep2_RNA-seq |
| GSM2183169 |
WT Tconv rep1_RNA-seq |
| GSM2183170 |
WT Tconv stim rep1_RNA-seq |
| GSM2183171 |
WT Treg rep3_RNA-seq |
| GSM2183172 |
WT Treg stim rep1_RNA-seq |
| GSM2183173 |
DKO Treg rep1_RNA-seq |
| GSM2183174 |
DKO Treg stim rep1_RNA-seq |
| GSM2183175 |
c-RelKO Treg rep1_RNA-seq |
| GSM2183176 |
WT Tconv rep2_RNA-seq |
| GSM2183177 |
WT Tconv stim rep2_RNA-seq |
| GSM2183178 |
WT Treg rep4_RNA-seq |
| GSM2183179 |
WT Treg stim rep2_RNA-seq |
| GSM2183180 |
p65KO Treg rep3_RNA-seq |
| GSM2183181 |
p65KO Treg stim_RNA-seq |
| GSM2183182 |
cRelKO Treg rep2_RNA-seq |
| GSM2183183 |
cRelKO Treg stim_RNA-seq |
| GSM2183184 |
DKO Treg rep2_RNA-seq |
| GSM2183185 |
DKO Treg stim rep2_RNA-seq |
| GSM2183186 |
WT Tconv stim_RNA-seq |
| GSM2183187 |
WT Treg stim_RNA-seq |
| GSM2183188 |
FoxP3 del Treg stim_RNA-seq |
| GSM2183189 |
NFkB del Treg stim_RNA-seq |
| GSM2641047 |
Input chromatin, rep1 |
| GSM2641048 |
Input chromatin, rep2 |
| GSM2641049 |
p65 IP in Tconv, anti-CD3/CD28 stim, rep1 |
| GSM2641050 |
p65 IP in Tconv, anti-CD3/CD28 stim, rep2 |
| GSM2641051 |
p65 IP in Tconv, unstim, rep1 |
| GSM2641052 |
p65 IP in Tconv, unstim, rep2 |
| GSM2641053 |
p65 IP in Treg, anti-CD3/CD28 stim, rep1 |
| GSM2641054 |
p65 IP in Treg, anti-CD3/CD28 stim, rep2 |
| GSM2641055 |
p65 IP in Treg, unstim, rep1 |
| GSM2641056 |
p65 IP in Treg, unstim, rep2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE82076 |
An NF-κB-dependent, lineage-specific transcriptional program regulates Treg identity and function [RNA-seq] |
| GSE99319 |
An NF-kB-dependent, lineage specific transcriptional program regulates Treg identity and function [ChIP-seq] |
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| Relations |
| BioProject |
PRJNA407778 |
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