|
| Status |
Public on Dec 01, 2017 |
| Title |
Cohesin facilitates zygotic genome activation in Zebrafish |
| Organism |
Danio rerio |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
29158440 |
| Submission date |
Jul 20, 2016 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Michael Meier |
| Organization name |
University of Otago
|
| Department |
Pathology
|
| Lab |
Chromosome Structure and Development
|
| Street address |
1st Floor Hercus Building, Dunedin School of Medicine, Great King Street
|
| City |
Dunedin |
| ZIP/Postal code |
9012 |
| Country |
New Zealand |
| |
|
| Platforms (3) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
| GPL18413 |
Illumina HiSeq 2500 (Danio rerio) |
| GPL20828 |
Illumina NextSeq 500 (Danio rerio) |
|
| Samples (61)
|
|
| This SuperSeries is composed of the following SubSeries: |
| GSE84600 |
ChIP-seq analysis of Rad21 binding during genome activation |
| GSE84601 |
RNA-seq analysis comparing WT, Rad21 MO and CTCF MO zebrafish embryos at stages (2.5, 3.3, 4.5, 5.3, 10 hpf) pre and post ZGA (zygotic genome activation) |
| GSE100286 |
Atac-seq of 2.5 hpf zebrafish embryos |
|
| Relations |
| BioProject |
PRJNA330613 |
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