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Series GSE84657 Query DataSets for GSE84657
Status Public on Jun 28, 2017
Title Dynamic and stable enhancer-promoter contacts regulate terminal differentiation [ChIP-Seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Genome-wide chromosome conformation capture (Hi-C) and promoter-capture Hi-C (CHi-C) were performed during epidermal differentiation. These data indicate that dynamic and constitutive enhancer-promoter contacts combine to control gene induction during differentiation and that chromosome conformation enables discovery of new TFs with distinct roles in this process.
 
Overall design ChIP-seq data from epidermal keratinocyte progenitor and differentiated cells.
 
Contributor(s) Rubin AJ, Barajas B, Khavari PA
Citation(s) 28805829
Submission date Jul 21, 2016
Last update date May 15, 2019
Contact name Paul Khavari
Organization name Stanford University
Street address 269 Campus Drive, CCSR 2150
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (4)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (24)
GSM2247241 H3K27ac ChIP-seq Primary Epidermal Keratinocyte Biological Replicate 1 - Differentiation Day 0
GSM2247242 H3K27ac ChIP-seq Primary Epidermal Keratinocyte Biological Replicate 1 - Differentiation Day 3
GSM2247243 H3K27ac ChIP-seq Primary Epidermal Keratinocyte Biological Replicate 1 - Differentiation Day 6
This SubSeries is part of SuperSeries:
GSE84662 Dynamic and stable enhancer-promoter contacts regulate terminal differentiation
Relations
BioProject PRJNA330779
SRA SRP079141

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE84657_RAW.tar 5.1 Gb (http)(custom) TAR (of BIGWIG, BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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