|
| Status |
Public on Nov 28, 2017 |
| Title |
Control of gene expression in senescence through transcriptional read-through of convergent protein-coding genes |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
29186682 |
| Submission date |
Aug 02, 2016 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Estelle Nicolas |
| E-mail(s) |
estelle.nicolas@univ-tlse3.fr
|
| Phone |
+33 5 61 55 81 11
|
| Organization name |
INSERM
|
| Lab |
UMR5077, MCD, CBI
|
| Street address |
118 route de Narbonne
|
| City |
Toulouse |
| ZIP/Postal code |
31062 |
| Country |
France |
| |
|
| Platforms (2) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (14)
|
| GSM2781945 |
H2A.Z ChIP-seq in proliferative cells- Replicate #1 |
| GSM2781946 |
H2A.Z ChIP-seq in senescent cells - Replicate #1 |
| GSM2781947 |
H2A.Z ChIP-seq in proliferative cells - Replicate #2 |
| GSM2781948 |
H2A.Z ChIP-seq in senescent cells - Replicate #2 |
| GSM2781949 |
H3 ChIP-seq in proliferative cells |
| GSM2781950 |
H3 ChIP-seq in senescent cells |
| GSM2781951 |
Strand-specific RNA-seq in proliferative cells- Replicate #1 |
| GSM2781952 |
Strand-specific RNA-seq in senescent cells- Replicate #1 |
| GSM2781953 |
Strand-specific RNA-seq in proliferative cells- Replicate #2 |
| GSM2781954 |
Strand-specific RNA-seq in senescent cells- Replicate #2 |
| GSM2781955 |
Strand-specific RNA-seq in siCtrl-treated proliferative WI38 hTERT RAF1-ER cells- Replicate #1 |
| GSM2781956 |
strand-specific RNA-seq in siH2A.Z-treated proliferative WI38 hTERT RAF1-ER cells- Replicate #1 |
| GSM2781957 |
Strand-specific RNA-seq in siCtrl-treated proliferative WI38 hTERT RAF1-ER cells- Replicate #2 |
| GSM2781958 |
Strand-specific RNA-seq in siH2A.Z-treated proliferative WI38 hTERT RAF1-ER cells- Replicate #2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE85081 |
Control of gene expression in senescence through transcriptional read-through of convergent protein-coding genes [ChIP-Seq] |
| GSE85082 |
Control of gene expression in senescence through transcriptional read-through of convergent protein-coding genes [RNA-Seq PROLIF-SEN] |
| GSE85083 |
Control of gene expression in senescence through transcriptional read-through of convergent protein-coding genes [RNA-Seq siRNA H2A.Z] |
|
| Relations |
| BioProject |
PRJNA336107 |
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