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Series GSE86096 Query DataSets for GSE86096
Status Public on Aug 27, 2016
Title Expression data from infected mice bladder and kidney tissue
Organism Mus musculus
Experiment type Expression profiling by array
Summary Acute cystitis is rapidly becoming a therapeutic enigma, as antibiotic resistance is reducing the options to a minimum. Fortunately, new insights are now making it possible to explore immune response modifiers as alternatives to antibiotics. In patients with acute cystitis, infection triggers a rapid and potent inflammatory response in the bladder mucosa and clinical symptoms include pain, urgency and frequency of urination. The molecular basis of these symptoms is not well understood, but bacterial interactions with the bladder epithelium have been shown to create inflammatory cascades. This study examined how innate immune response genes influence the outcome of bladder infection and the pathogenesis of acute cystitis with a particular focus on IL-1β. C57BL/6 mice were intravesically infected with relevant uropathogenic Escherichia coli strain, CFT073. Acute cystitis in infected bladders was defined by macroscopic inspection of edema, hyperemia and purulent discharge followed by histology and immunohistochemistry, after 24 hours and seven days. Genetic determinants of transient bladder inflammation versus severe disease were subsequently identified using C57BL/6 mice with specific inflammasome gene deletions (Il1b-/-, Casp1-/-, Asc-/- and Nlrp3-/-). Using genome-wide transcriptomic analysis to characterize genes regulated by infection in the bladders of these mice, we identified acute cystitis as an IL-1β-driven, hyper-inflammatory disease. Consistent with such a role, Il1b-/- mice were protected from infection and pathology. In contrast Asc-/- and Nlrp3-/- mice developed progressive IL-1β-driven bladder inflammation and severe pathology, caused by a new, non-canonical IL-1β processing mechanism, involving the metalloproteinase MMP-7. Using IL-1β and MMP-7 as targets for immunotherapy, we succeeded in protecting susceptible Asc-/- mice against acute cystitis, confirming the potential of immunotherapy for this indication. The results reproduce important aspects of human cystitis in the murine urinary tract infection (UTI) model and provide a comprehensive molecular framework for the pathogenesis and immunotherapy of acute cystitis, one of the most common bacterial infections in man.
 
Overall design Mouse were infected intravesically with E. coli CFT073 and bladder and kidney samples were collected after 7 days. Isolated RNA was subjected to Affymetrix whole genome transcriptomic analysis.
 
Contributor(s) Ambite I, Puthia M, Svanborg C
Citation(s) 27732661
Submission date Aug 26, 2016
Last update date Aug 06, 2018
Contact name Ines Ambite
E-mail(s) ines.ambite@med.lu.se
Organization name Lund University
Department Laboratory Medicine
Lab MIG
Street address Klinikgatan 28
City Lund
ZIP/Postal code 22184
Country Sweden
 
Platforms (1)
GPL11180 [HT_MG-430_PM] Affymetrix HT MG-430 PM Array Plate
Samples (40)
GSM2293492 WT_kidney_7days_exp1_rep1
GSM2293493 WT_kidney_7days_exp1_rep2
GSM2293494 WT_kidney_0day_exp1_rep1
Relations
BioProject PRJNA340255

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE86096_RAW.tar 82.8 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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