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Series GSE86110 Query DataSets for GSE86110
Status Public on Jan 08, 2018
Title Roquin suppresses PI3K-mTOR signaling to control T cell differentiation and Treg effector function
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary Roquin proteins are required to preclude spontaneous T cell activation and aberrant T follicular helper (Tfh) or T helper 17 (Th17) differentiation. Here, we show that deletion of Roquin encoding alleles in regulatory T cells (Tregs) also caused the activation of conventional T cells. These Tregs exhibited a follicular Treg phenotype, CD25 downregulation and could not protect from colitis. Mechanistically, Roquin was required for full expression and activity of Pten and Foxo1, two essential signaling molecules in Tregs and effector T cells. Roquin upregulated Pten by interfering with miR-17~92 binding to an overlapping cis-element in the Pten 3' UTR and downregulated the Foxo1-specific E3 ubiquitin ligase Itch. Loss of Roquin enhanced mTOR signaling and global protein synthesis, while inhibition of PI3K or mTOR in Roquin-deficient CD4+ T cells corrected increased Tfh and Th17 differentiation. Thereby, the control of PI3K-mTOR signaling by Roquin prevents autoimmunity through T cell-intrinsic and Treg-mediated regulation.
 
Overall design Examination of transcriptome and ribosome occupancy in MEF and T cells upon Roquin expression and inhibition. Examination of Roquin binding sites in the mouse transcriptome of MEF cells. Examination of transcriptome in CD25+ and CD25- Treg cells from WT and Roquin DKO mice.
 
Contributor(s) Guimaraes JC, Essig K, Heissmeyer V
Citation(s) 29246441, 30232334
Submission date Aug 26, 2016
Last update date May 20, 2019
Contact name Joao C Guimaraes
E-mail(s) joaoguima@gmail.com
Organization name University of Basel
Department Biozentrum
Street address Klingelbergstrasse 50 / 70
City Basel
ZIP/Postal code 4056
Country Switzerland
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (126)
GSM2293750 A01-1-Ribo-MEF-ICOS-CDS+Dox
GSM2293751 A01-2-Ribo-MEF-ICOS-CDS+Dox
GSM2293752 A01-3-Ribo-MEF-ICOS-CDS+Dox
Relations
BioProject PRJNA340280
SRA SRP083073

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE86110_mef_dox_ribseq_counts.csv.gz 468.8 Kb (ftp)(http) CSV
GSE86110_mef_dox_rnaseq_counts.csv.gz 575.9 Kb (ftp)(http) CSV
GSE86110_mef_parclip_clusters.csv.gz 43.4 Kb (ftp)(http) CSV
GSE86110_mef_tam_ribseq_counts.csv.gz 339.6 Kb (ftp)(http) CSV
GSE86110_mef_tam_rnaseq_counts.csv.gz 348.2 Kb (ftp)(http) CSV
GSE86110_tcell_mepa_ribseq_counts.csv.gz 140.5 Kb (ftp)(http) CSV
GSE86110_tcell_mepa_rnaseq_counts.csv.gz 199.2 Kb (ftp)(http) CSV
GSE86110_tregs_rnaseq_counts.csv.gz 587.9 Kb (ftp)(http) CSV
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Processed data are available on Series record

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