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Series GSE87781 Query DataSets for GSE87781
Status Public on Apr 01, 2017
Title Retinoic acid-free spheroid culture condition is suitable for growth of TH-MYCN neuroblasts
Organism Mus musculus
Experiment type Expression profiling by array
Summary It has been already reported that there are undifferentiated/proliferating neuroblasts in the postnatal sympathetic ganglia in TH-MYCN mice. Given the fact that neuroblastoma is derived from sympathoadrenal progenitors which are originated from neural crest stem cells, we attempted to use the well-established culture condition that has been utilized to maintain derivatives of neural crest stem cells. However, the medium contained retinoic acid (RA) which is known to induce neuroblastoma differentiation and is used in clinical treatment against high-risk patients. In the present study, the medium with RA (RA (+) medium) and without RA (RA (-) medium) were compared. Since undifferentiated neuroblasts are observable at one of the sympathetic ganglia, superior mesenteric ganglion (SMG), in 3-week-old TH-MYCN hemizygote (TH-MYCN+/-) mice with 129+Ter/SvJcl mice background, we dissected and dissociated the SMG to prepare single cells. These cells were cultured in either RA (+) or RA (-) media. Spheres formed in either RA (+) or RA (-) medium were subjected to microarray analysis.
 
Overall design Dissociated single cells from a 3-week-old TH-MYCN (hemizygote) SMG were divided into RA (+) and RA (-) medium. Formed primary spheres were subjected to micorarray analyis. RA (+) and RA (-) spheref from four individual biological replicates were analyzed.
 
Contributor(s) Tsubota S, Kadomatsu K
Citation(s) 28807939
Submission date Oct 10, 2016
Last update date Feb 02, 2018
Contact name Shoma Tsubota
E-mail(s) tsubota@med.nagoya-u.ac.jp
Organization name Nagoya University Graduate School of Medicine
Department Department of Molecular Biology
Street address 65 Tsurumai-cho, Showa-ku
City Nagoya
State/province Aichi
ZIP/Postal code 466-8550
Country Japan
 
Platforms (1)
GPL10787 Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Probe Name version)
Samples (8)
GSM2340180 3w TH-MYCN_rep.1_RA (+) sphere
GSM2340181 3w TH-MYCN_rep.2_RA (+) sphere
GSM2340182 3w TH-MYCN_rep.3_RA (+) sphere
This SubSeries is part of SuperSeries:
GSE87784 Emerging role of polycomb repressive complex 2 in the early neuroblastoma tumorigenesis in TH-MYCN transgenic mice and its association with human neuroblastoma
Relations
BioProject PRJNA347593

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87781_RAW.tar 25.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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