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| Status |
Public on Oct 10, 2018 |
| Title |
RNA-seq analysis of livers of C57BL/6 mice upon antagomiR-122 and CL316243 treatment |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Purpose: miR-122 plays a role in lipid metabolism in the liver. The goal of this study is to search for additional metabolic pathways in which miR-122 is involved. Methods: mice were administered with antagomiR-122 (to inhibit miR-122) or antagomiR-control together with CL316243 (β 3-adrenergic receptor agonist, which causes TG hydrolysis to FFAs). Liver mRNAS were generated from 4 mice in each group by deep sequencing using Illumina Nextseq 500 System. The sequence reads that passed quality filters were analyzed with TopHat followed by Cufflinks. The Ingenuity IPA and GeneAnalytics analysis were performed to untangle the biological processes involving the differentially expressed genes. Results: Cufflink algorithm revealed that 182 genes were differentially expressed in the mice livers. According to IPA analysis, the circadian rhythm pathway and adipogenesis were significantly disrupted. Conclutions: Inhibition of miR-122 Activates Several Metabolic Pathways Which Regulate Hepatic Triglycerides Synthesis and Storage
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| Overall design |
C57BL/6 mice were administered with antagomiR-122 or antagomiR-control together with CL316243 (β 3-adrenergic receptor agonist, which causes TG hydrolysis to FFAs). Livers mRNA were generated from 4 mice in each group by deep sequencing using Illumina Nextseq 500 System.
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| Citation missing |
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| Submission date |
Oct 11, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
chofit chai |
| E-mail(s) |
chofit.chai@mail.huji.ac.il
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| Organization name |
hadassah
|
| Department |
gene therapy
|
| Street address |
Ein Karem
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| City |
Jerusalem 9112001 |
| ZIP/Postal code |
9112001 |
| Country |
Israel |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA347849 |
| SRA |
SRP091394 |
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