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Series GSE89310 Query DataSets for GSE89310
Status Public on Dec 21, 2016
Title A Homeostatic Shift Facilitates Endoplasmic Reticulum Proteostasis through Transcriptional Integration of Proteostatic Stress Response Pathways [expression]
Organism Mus musculus
Experiment type Expression profiling by array
Summary Eukaryotic cells maintain protein homeostasis through the activity of multiple basal and inducible systems, which function in concert to allow cells to adapt to a wide range of environmental conditions. Although the transcriptional programs regulating individual pathways have been studied in detail, it is not known how the different pathways are transcriptionally integrated such that a deficiency in one pathway can be compensated by a change in an auxiliary response. One such pathway that plays an essential role in many proteostasis responses is the ubiquitin-proteasome system, which functions to degrade damaged, unfolded, or short half-life proteins. Transcriptional regulation of the proteasome is mediated by the transcription factor Nrf1. Using a conditional knockout mouse model, we found that Nrf1 regulates protein homeostasis in the endoplasmic reticulum (ER) through transcriptional regulation of the ER stress sensor ATF6. In Nrf1 conditional-knockout mice, a reduction in proteasome activity is accompanied by an ATF6-dependent downregulation of the endoplasmic reticulum-associated degradation machinery, which reduces the substrate burden on the proteasome. This indicates that Nrf1 regulates a homeostatic shift through which proteostasis in the endoplasmic reticulum and cytoplasm are coregulated based on a cell's ability to degrade proteins.
 
Overall design Gene expression in the liver obtained from Nrf1 CKO and control mice. Nrf1flox/flox::CYP1A1-Cre mice subcutaneously injected with 40 mg/kg body weight of 3-methylcholanthrene (3MC) were used as Nrf1 CKO mice, while Nrf1flox/flox mice similarly treated with 3MC were used as control mice. Livers were obtained 2 weeks after the 3MC injection.
 
Contributor(s) Baird L, Tsujita T, Kobayashi EH, Funayama R, Nagashima T, Nakayama K, Yamamoto M
Citation(s) 27920251
Submission date Oct 30, 2016
Last update date Feb 02, 2018
Contact name Eri H Kobayashi
Organization name Tohoku University Graduate School of Medicine
Department Medical Biochemistry
Street address 2-1 Seiryo-machi, Aobaku
City Sendai
State/province Miyagi
ZIP/Postal code 980-8575
Country Japan
 
Platforms (1)
GPL10787 Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Probe Name version)
Samples (8)
GSM2365858 Nrf1F/F_CornOil
GSM2365859 Control_1
GSM2365860 Control_2
Relations
BioProject PRJNA351746

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89310_RAW.tar 25.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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