GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE89440
Query DataSets for GSE89440
Status
Public on Aug 28, 2018
Title
Interferon stimulation creates chromatin marks to establish transcriptional memory
Organism
Mus musculus
Experiment type
Expression profiling by array
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30201712
Submission date
Nov 02, 2016
Last update date
May 17, 2019
Contact name
Rui Kamada
E-mail(s)
kamadar@sci.hokudai.ac.jp
Phone
+81-11-706-2721
Organization name
Hokkaido University
Department
Department of Chemistry, Faculty of Science
Lab
Laboratory of Biological Science
Street address
N10 W8, Kita-ku
City
Sapporo
ZIP/Postal code
060-0810
Country
Japan
Platforms (2)
GPL6246
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]
GPL13112
Illumina HiSeq 2000 (Mus musculus)
Samples (60)
Less...
More...
GSM2358619
Naïve-0h [EA12035_255968_MOGENE-1_0-ST-V1_1.0HNAIVE]
GSM2358620
Naïve-0h [EA12035_255972_MOGENE-1_0-ST-V1_5.0HNAIVE]
GSM2358621
Naïve-0h [EA12035_260026_MOGENE-1_0-ST-V1_1.0HNAIVE]
GSM2358622
Naïve-0h [EA12035_260030_MOGENE-1_0-ST-V1_5.0HNAIVE]
GSM2358623
Naïve-3h [EA12035_260028_MOGENE-1_0-ST-V1_3.3HNAIVE]
GSM2358624
Naïve-3h [EA12035_260032_MOGENE-1_0-ST-V1_7.3HNAIVE]
GSM2358625
Naïve-6h [EA12035_255970_MOGENE-1_0-ST-V1_3.6HNAIVE]
GSM2358626
Naïve-6h [EA12035_255974_MOGENE-1_0-ST-V1_7.6HNAIVE]
GSM2358627
Pretreated-0h [EA12035_255969_MOGENE-1_0-ST-V1_2.0HPREIFN]
GSM2358628
Pretreated-0h [EA12035_255973_MOGENE-1_0-ST-V1_6.0HPREIFN]
GSM2358629
Pretreated-0h [EA12035_260027_MOGENE-1_0-ST-V1_2.0HPREIFN]
GSM2358630
Pretreated-0h [EA12035_260031_MOGENE-1_0-ST-V1_6.0HPREIFN]
GSM2358631
Pretreated-3h [EA12035_260029_MOGENE-1_0-ST-V1_4.3HPREIFN]
GSM2358632
Pretreated-3h [EA12035_260033_MOGENE-1_0-ST-V1_8.3HPREIFN]
GSM2358633
Pretreated-6h [EA12035_255971_MOGENE-1_0-ST-V1_4.6HPREIFN]
GSM2358634
Pretreated-6h [EA12035_255975_MOGENE-1_0-ST-V1_8.6HPREIFN]
GSM2366914
Naïve-0h
GSM2366916
Naïve-1h
GSM2366917
Naïve-2h
GSM2366919
Naïve-4h
GSM2366920
Naïve-6h
GSM2366922
Pretreated-0h
GSM2366924
Pretreated-1h
GSM2366926
Pretreated-2h
GSM2366927
Pretreated-4h
GSM2366929
Pretreated-6h
GSM2366943
Input-Naïve-0h-MEF
GSM2366944
Input-Naïve-0.5h-MEF
GSM2366945
Input-Pretreated-0h-MEF
GSM2366946
Input-Pretreated-0.5h-MEF
GSM2366947
PolII_Naïve-0h-MEF
GSM2366948
PolII_Naïve-0.5h-MEF
GSM2366949
PolII_Pretreated-0h-MEF
GSM2366950
PolII_Pretreated-0.5h-MEF
GSM2366951
HA_Naïve-0h-MEF
GSM2366952
HA_Pretreated-0h-MEF
GSM2366953
H3K36me3_Naïve-0h-MEF
GSM2366954
H3K36me3_Pretreated-0h-MEF
GSM2366955
H2AZ_Naïve-0h-MEF
GSM2366956
H2AZ_Pretreated-0h-MEF
GSM2366957
H4ac_Naïve-0h-MEF
GSM2366958
H4ac_Pretreated-0h-MEF
GSM2366959
H3K4me1_Naïve-0h-MEF
GSM2366960
H3K4me1_Pretreated-0h-MEF
GSM2366961
H3K4me3_Naïve-0h-MEF
GSM2366962
H3K4me3_Pretreated-0h-MEF
GSM2366963
Input-Naïve-0h-Macrophage
GSM2366964
Input-Naïve-1h-Macrophage
GSM2366965
Input-Pretreated-0h-Macrophage
GSM2366966
Input-Pretreated-1h-Macrophage
GSM2366967
PolII_Naïve-0h-Macrophage
GSM2366968
PolII_Naïve-1h-Macrophage
GSM2366969
PolII_Pretreated-0h-Macrophage
GSM2366970
PolII_Pretreated-1h-Macrophage
GSM2366971
HA_Naïve-0h-Macrophage
GSM2366972
HA_Pretreated-0h-Macrophage
GSM2366973
H3K36me3_Naïve-0h-Macrophage
GSM2366974
H3K36me3_Pretreated-0h-Macrophage
GSM2366975
H3K4me1_Naïve-0h-Macrophage
GSM2366976
H3K4me1_Pretreated-0h-Macrophage
This SuperSeries is composed of the following SubSeries:
GSE89092
Microarray analysis of interferon stimulated bone-marrow derived macrophages Transcriptomes
GSE89349
Next Generation Sequencing Facilitates Quantitative Analysis of interferon stimulated MEFs Transcriptomes [RNA-Seq]
GSE89351
Genome-wide maps of chromatin state in interferon stimulated cells
Relations
BioProject
PRJNA352210
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE89440_RAW.tar
115.8 Mb
(http)
(custom)
TAR (of CEL, CHP, WIG)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|