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Series GSE89477 Query DataSets for GSE89477
Status Public on Nov 26, 2017
Title Single-cell profiling of tumor infiltrating T cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Immune checkpoint blockade has shown tremendous anti-tumor potential in the clinic. However, these therapies are only effective in a subset of patients, so identification of additional immunomodulatory molecules that enhance the anti-tumor activity of these treatments may expand their clinical utility. In particular, identifying small molecules that complement existing immunotherapies has been relatively unexplored, so we performed a small molecule screen to identify compounds that can enhance co-inhibitory molecule blockade, to improve the anti-tumor adaptive immune response. Our unbiased screen identified inhibitors of cyclin-dependent kinase 4 and 6 (CDK4/6), including the FDA-approved palbociclib, as a class of small molecule compounds that exhibited significant immunostimulatory activity in vitro. In accordance with our in vitro finding of enhanced NFAT signaling, single-cell RNA-sequencing confirmed that in vivo exposure to CDK4/6 inhibitors enhanced NFAT signaling in tumor infiltrating T cells. Moreover, our results revealed that CDK4/6 inhibition up-regulated activation molecules and down-regulated suppressive molecules in these cells. CDK4/6 inhibition also increased the number of T cells with activated TCR (T cell receptor) signaling, as well as factors that are important for signal transduction downstream of TCR signaling. In summary, the impact of CDK4/6i on cell cycle progression and T cell proliferation are balanced favorably towards increased T cell recruitment and enhanced effector cell function, mediated in part by activation of the NFAT family of transcription factors. Further, our results demonstrate that CDK4/6i enhances PD-1 blockade through increased T-cell effector function and inhibition of immune suppressive cytokine production. While prolonged CDK4/6i treatment could be immunosuppressive due to adverse effects on lymphocyte proliferation, properly timed/sequenced CDK4/6i may potentiate the clinical impact of anti-PD-1/PD-L1 antibodies. As palbociclib is FDA-approved and multiple other CDK4/6 inhibitors are in clinical trials, we expect that this hypothesis will undergo rapid testing in humans.
 
Overall design Single-cell comparison of control and CDK4/6 inhibitor treated tumor infiltrating T cells
 
Contributor(s) Dries R, Deng J
Citation(s) 29101163
Submission date Nov 03, 2016
Last update date May 15, 2019
Contact name Ruben Dries
E-mail(s) rubendries@gmail.com
Organization name DFCI
Department Computational Biology
Lab Longwood Center
Street address 360 Longwood Ave
City Boston
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (384)
GSM2373111 A01_plate1_1
GSM2373112 A02_plate1_9
GSM2373113 A03_plate1_17
Relations
BioProject PRJNA352336
SRA SRP092523

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89477_information_raw_data.xlsx 37.6 Kb (ftp)(http) XLSX
GSE89477_log_normalized_expr_plus1.txt.gz 25.2 Mb (ftp)(http) TXT
GSE89477_phenodata_samples.txt.gz 1.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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