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Series GSE89793 Query DataSets for GSE89793
Status Public on Nov 14, 2016
Title Loss of the Inhibitory Immune Checkpoint CD85j/LILRB1 on Malignant Plasma Cells Contributes to Immune Escape in Multiple Myeloma
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Mechanisms of immune regulation may control proliferation of aberrant plasma cells (PCs) in patients with the asymptomatic monoclonal gammopathy of undetermined significance (MGUS) preventing progression to active multiple myeloma (MM). We investigated the role of CD85j (LILRB1), an inhibitory immune checkpoint for B cell function, in MM pathogenesis.
We used microarrays to gain insight into the molecular mechanisms underlying CD85j functions in myeloma cells.
 
Overall design MM cell lines (U266, RPMI-8226, ARP-1) were lentivirally transduced to express CD85j-GFP or GFP-control in the presence of 8 µg/mL polybrene. Lentiviral particles were generated using HEK293T cells and the Lenti-vpak packaging kit (packaging plasmids and MegaTran1.0 transfection reagent) with Lenti ORF clone of human LILRB1, transcript variant 1, pLenti-C-mGFP vector purchased from OriGene Technologies, Inc. (Rockville, MD, USA). After 3 days, cells were FACS-sorted and total RNA was isolated using Trizol® reagent according to the manufacturer's guidelines. RNA samples had a RNA integrity number (RIN) above 8 determined using a Bioanalyzer 2100 instrument (Agilent Technologies).
 
Contributor(s) Lozano E, Fernandez de Larrea C
Citation(s) 29531171
Submission date Nov 13, 2016
Last update date Mar 21, 2019
Contact name Ester Lozano
E-mail(s) elozano@ub.edu
Phone 932275400
Organization name IDIBAPS
Department Hemato-Oncology
Lab Amyloidosis and Myeloma Unit
Street address Rosselló, 153
City Barcelona
State/province Barcelona
ZIP/Postal code 08036
Country Spain
 
Platforms (1)
GPL13667 [HG-U219] Affymetrix Human Genome U219 Array
Samples (6)
GSM2388997 U266 expressing GFP
GSM2388998 U266 expressing CD85J (LILRB1)
GSM2388999 RPMI-8226 expressing GFP
Relations
BioProject PRJNA353312

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89793_RAW.tar 13.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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