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Series GSE8989 Query DataSets for GSE8989
Status Public on Sep 11, 2007
Title Circadian regulation in rat skeletal muscle
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary In intact animals, time of drug administration may be an important factor influencing drug response. Our general goal seeks to incorporate circadian time into the study of corticosteroid regulated gene expression. This study is designed to examine fluctuations in gene expression in skeletal muscle within the 24 hour circadian cycle in normal animals. Circadian time is relevant to designing optimal corticosteroid dosing regimens. Since levels of endogenous steroid exhibit circadian fluctuations, it is our hypothesis that the expression of genes controlled by corticosteroids either directly or indirectly will also exhibit a circadian pattern in normal animals.
Keywords: time series design
 
Overall design Our previous studies examined changes in gene expression in response to corticosteroid treatment in adrenalectomized animals, where endogenous glucocorticoids are absent. This study is designed to examine baseline patterns of gene expression in normal animals within a 24 hour cycle. This data will be used in conjunction with future studies involving treatment of animals with corticosteroids at defined times within the circadian cycle. Fifty-four male normal Wistar rats (250-350 g body weight) were housed in a strictly controlled stress free environment with light:dark cycles of 12 hr:12hr. Three animals were sacrificed at each of 18 selected time points within the 24 hour cycle. RNA was prepared from gastrocnemius muscles for gene arrays. Time point designations reflect time after lights on in hours.
 
Contributor(s) Almon R
Citation(s) 18667713
Submission date Sep 07, 2007
Last update date Oct 01, 2019
Contact name Eric P Hoffman
E-mail(s) ericphoffman@gmail.com
Organization name Binghamton University - SUNY
Department Pharmaceutical Sciences
Street address PO Box 6000
City Binghamton
State/province NY
ZIP/Postal code 13902
Country USA
 
Platforms (1)
GPL341 [RAE230A] Affymetrix Rat Expression 230A Array
Samples (54)
GSM227289 Richard Almon-1-1133800608698
GSM227290 Richard Almon-19-1133800609354
GSM227291 Richard Almon-9-1133800608979
Relations
BioProject PRJNA102457

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE8989_RAW.tar 89.8 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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