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Series GSE89898 Query DataSets for GSE89898
Status Public on Dec 19, 2016
Title The Gfi1-Foxo1 axis controls the fidelity of effector gene expression and developmental maturation of thymocytes
Organism Mus musculus
Experiment type Expression profiling by array
Summary Double-positive (DP) thymocytes respond to intrathymic TCR signals by undergoing positive selection and lineage differentiation into single-positive (SP) mature cells. Concomitant with these wellcharacterized events is the acquisition of a mature T cell gene expression program characterized by the induction of effector molecules IL-7Ra, S1P1 and CCR7, but the underlying mechanism remains elusive. We report here that transcription repressor Gfi1 orchestrates the fidelity of DP gene expression program and developmental maturation into SP cells. Loss of Gfi1 resulted in premature induction of effector genes and transcription factors Foxo1 and Klf2 in DP thymocytes, and accumulation of post-selection intermediate populations and accelerated transition into SP cells. Strikingly, partial loss of Foxo1 function, but not restored survival fitness, rectified the dysregulated gene expression and thymocyte maturation in Gfi1-deficient mice. Our results establish Gfi1-Foxo1 axis and the transcriptional circuitry that actively maintain DP identity and shape the proper generation of mature T cells
 
Overall design We used microarrays to compare the global transcription profiles of CD4+CD8+ double-positive (DP) thymocytes isolated from wild-type mice, and thymocytes from hCD2-iCre x Gfi1fl/fl mice
 
Contributor(s) Shi L, Saravia J, Guy CS, Neale G, Chi H
Citation(s) 27994150
Submission date Nov 16, 2016
Last update date Aug 06, 2018
Contact name Geoffrey Neale
E-mail(s) geoffrey.neale@stjude.org
Organization name St Jude Childrens Research Hospital
Department Hartwell Center
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL11180 [HT_MG-430_PM] Affymetrix HT MG-430 PM Array Plate
Samples (4)
GSM2392781 Thymocytes from WT mouse, replicate 1
GSM2392782 Thymocytes from hCD2-iCre x Gfi1fl/fl mouse, replicate 1
GSM2392783 Thymocytes from WT mouse, replicate 2
Relations
BioProject PRJNA354279

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89898_RAW.tar 8.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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