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Status |
Public on Jul 25, 2017 |
Title |
Mechanisms of transcription factor-mediated direct reprogramming of mouse embryonic stem cells to trophoblast stem-like cells |
Organism |
Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing
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Summary |
Direct reprogramming can be achieved by forced expression of transcription factors (TFs). Yet how such TFs mediate repression of initial cell-type-specific genes while activating target cell-type-specific genes is unclear. Here, we achieve embryonic stem (ES) to trophoblast stem (TS)-like cell reprogramming by introducing individual TS-specific “CAG” factors (Cdx2, Arid3a, Gata3). We interrogated their chromosomal target occupancies, modulation of global transcriptome and chromatin accessibility at the initial stage of reprograming. Our findings uncovered a sequential, two-step mechanism of cellular reprogramming in which repression of exiting ES pluripotency is followed by activated conversion to TS cells by CAG factors.
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Overall design |
TS-like cells were generated from ES cells using CAG factors, followed by deep sequencing, using Illumina
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Contributor(s) |
Kim J |
Citation(s) |
28973471 |
Submission date |
Dec 01, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Jonghwan Kim |
E-mail(s) |
jybella@utexas.edu
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Phone |
512-232-8046
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Organization name |
University of Texas at Austin
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Department |
Department of Molecular Cell and Developmental Biology, Institute for Cellular and Molecular Biology
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Lab |
Kim Lab
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Street address |
2506 Speedway NMS 4.246
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City |
Austin |
State/province |
TX |
ZIP/Postal code |
78712 |
Country |
USA |
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Platforms (1) |
GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
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Samples (25)
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Relations |
BioProject |
PRJNA355855 |
SRA |
SRP094427 |