|
| Status |
Public on Jul 01, 2017 |
| Title |
A global map of RNA binding protein occupancy guides functional dissection of post-transcriptional regulation of the T cell transcriptome [Mm] |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RBP binding sites were globally mapped by a biochemical technique in mouse and human T cells
|
| |
|
| Overall design |
Protein bound segments of mammalian mRNAs were sequenced by capture of crosslinked, biotinylated RBPs and compared to RNAseq
|
| |
|
| Contributor(s) |
Litterman AJ, Ansel KM |
| Citation(s) |
38062486 |
| Submission date |
Feb 06, 2017 |
| Last update date |
Dec 14, 2023 |
| Contact name |
Adam Jacob Litterman |
| E-mail(s) |
adam.litterman@ucsf.edu
|
| Phone |
(415) 476-5373
|
| Organization name |
UCSF
|
| Department |
Microbiology and Immunology
|
| Lab |
Ansel Lab
|
| Street address |
513 Parnassus Avenue, UCSF Box 0414, HSE-201
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143-0414 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
|
| Samples (18)
|
|
| Relations |
| BioProject |
PRJNA371465 |
| SRA |
SRP098910 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE94554_All_genes.csv.gz |
2.9 Mb |
(ftp)(http) |
CSV |
| GSE94554_All_genes_RNAseq.csv.gz |
2.3 Mb |
(ftp)(http) |
CSV |
| GSE94554_Mouse_CD8_T_cells_GCLiPP_negative_strand.bw |
23.5 Mb |
(ftp)(http) |
BW |
| GSE94554_Mouse_CD8_T_cells_GCLiPP_positive_strand.bw |
23.8 Mb |
(ftp)(http) |
BW |
| GSE94554_Mouse_GCLiPP_peaks.bed.gz |
511.0 Kb |
(ftp)(http) |
BED |
| GSE94554_Mouse_T_cells_combined_GCLiPP_negative_strand.bw |
43.8 Mb |
(ftp)(http) |
BW |
| GSE94554_Mouse_T_cells_combined_GCLiPP_positive_strand.bw |
43.6 Mb |
(ftp)(http) |
BW |
| GSE94554_Mouse_Th2_T_cells_GCLiPP_negative_strand.bw |
31.4 Mb |
(ftp)(http) |
BW |
| GSE94554_Mouse_Th2_T_cells_GCLiPP_positive_strand.bw |
31.9 Mb |
(ftp)(http) |
BW |
| GSE94554_RAW.tar |
5.4 Gb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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