|
| Status |
Public on Feb 21, 2017 |
| Title |
Affymetrix CytoScan® HD Array (SNP and copy number array) used on pseudarthrosis tissue from Neurofibromatosis type 1 individuals |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by genome tiling array
Genome variation profiling by SNP array
|
| Summary |
Array data was used to confirm somatic deletion or copy neutral LOH on chromosome 17, that was inclusive of the NF1 gene.
|
| |
|
| Overall design |
Affymetrix Cytoscan arrays were performed according to the manufacturer's directions on DNA extracted from peripheral blood or from frozen pseudarthrosis tissue/bone samples.
Copy number analysis and SNP array data was performed for 3 pseudarthrosis tissue samples and one blood sample from Neurofibromatosis type 1 individuals.
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| |
|
| Contributor(s) |
Margraf RL, Mao R, Stevenson DA |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Feb 20, 2017 |
| Last update date |
Jul 13, 2018 |
| Contact name |
Rebecca Margraf |
| E-mail(s) |
rebecca.margraf@aruplab.com
|
| Organization name |
ARUP
|
| Street address |
500 Chipeta Way
|
| City |
Salt Lake City |
| State/province |
UT |
| ZIP/Postal code |
84105 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16131 |
[CytoScanHD_Array] Affymetrix CytoScan HD Array |
|
| Samples (4)
|
| GSM2495973 |
pseudarthrosis tissue from Individual 1 |
| GSM2495974 |
pseudarthrosis tissue from Individual 2 |
| GSM2495975 |
pseudarthrosis tissue from Individual 4 |
|
| Relations |
| BioProject |
PRJNA376013 |
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