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Series GSE96069 Query DataSets for GSE96069
Status Public on May 31, 2017
Title Identification of super-enhancers in colorectal cancer cell lines
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary H3K27 acetylation statuses were analyzed in four colon cancer cell lines (RKO, Caco2, SW48, and SW620), and colorectal cancer-specific super-enhancers were identified.
 
Overall design H3K27 acetylation statuses in four colon cancer cell lines were analyzed using Illumina HiSeq4000.
 
Contributor(s) Nakamura Y, Hattori N, Iida N, Ushijima T
Citation(s) 28576751
Submission date Mar 10, 2017
Last update date May 15, 2019
Contact name Naoko Iida
E-mail(s) niida@ncc.go.jp
Organization name National Cancer Center in Japan.
Lab Division of Epigenomics
Street address 5-1-1 Tsukiji
City Chuo-ku
State/province Tokyo
ZIP/Postal code 104-0045
Country Japan
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (8)
GSM2532773 Caco2_H3K27ac_ChIPSeq
GSM2532774 Caco2_input
GSM2532775 RKO_H3K27ac_ChIPSeq
Relations
BioProject PRJNA378753
SRA SRP101712

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96069_RAW.tar 652.7 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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