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| Status |
Public on Nov 20, 2017 |
| Title |
Single-cell transcriptome analysis of EpCAM+ cells from P3.25 mouse fetal livers |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We employed marker-free single-cell RNA-Seq to characterize comprehensive transcriptional profiles of 52 EpCAM+ cells from postnatal day 3.25 mouse fetal livers. These cells show characters of cholangiocytes. Combined with our previous single cell data of E11.5~P2.5 mouse fetal livers, our data depict the dynamic trajectories with transcriptional profiles at single-cell resolution during mouse liver development, and provide insights into the fate decision and transcriptional control of self-renewal, differentiation and maturation of liver stem/progenitor cells.
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| Overall design |
The transcriptomes of EpCAM+ single cells from P3.25 mouse livers were analyzed in this study. ERCC Spike-ins were included in each sample as control. We analyzed 52 single cells from pooled sibling livers. All single cell samples were processed on the C1 microfluidic system.
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| Contributor(s) |
Su X, Shi Y, Han Z |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 15, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Xianbin Su |
| E-mail(s) |
xbsu@sjtu.edu.cn
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| Organization name |
Shanghai Jiao Tong University
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| Department |
Shanghai Center for Systems Biomedicine
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| Street address |
Dongchuan Road 800
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| City |
Shanghai |
| ZIP/Postal code |
200240 |
| Country |
China |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (52)
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| GSM2536876 |
P3.25, EpCAM+ single cells, transcriptome 1 |
| GSM2536877 |
P3.25, EpCAM+ single cells, transcriptome 2 |
| GSM2536878 |
P3.25, EpCAM+ single cells, transcriptome 3 |
| GSM2536879 |
P3.25, EpCAM+ single cells, transcriptome 4 |
| GSM2536880 |
P3.25, EpCAM+ single cells, transcriptome 5 |
| GSM2536881 |
P3.25, EpCAM+ single cells, transcriptome 6 |
| GSM2536882 |
P3.25, EpCAM+ single cells, transcriptome 7 |
| GSM2536883 |
P3.25, EpCAM+ single cells, transcriptome 8 |
| GSM2536884 |
P3.25, EpCAM+ single cells, transcriptome 9 |
| GSM2536885 |
P3.25, EpCAM+ single cells, transcriptome 10 |
| GSM2536886 |
P3.25, EpCAM+ single cells, transcriptome 11 |
| GSM2536887 |
P3.25, EpCAM+ single cells, transcriptome 12 |
| GSM2536888 |
P3.25, EpCAM+ single cells, transcriptome 13 |
| GSM2536889 |
P3.25, EpCAM+ single cells, transcriptome 14 |
| GSM2536890 |
P3.25, EpCAM+ single cells, transcriptome 15 |
| GSM2536891 |
P3.25, EpCAM+ single cells, transcriptome 16 |
| GSM2536892 |
P3.25, EpCAM+ single cells, transcriptome 17 |
| GSM2536893 |
P3.25, EpCAM+ single cells, transcriptome 18 |
| GSM2536894 |
P3.25, EpCAM+ single cells, transcriptome 19 |
| GSM2536895 |
P3.25, EpCAM+ single cells, transcriptome 20 |
| GSM2536896 |
P3.25, EpCAM+ single cells, transcriptome 21 |
| GSM2536897 |
P3.25, EpCAM+ single cells, transcriptome 22 |
| GSM2536898 |
P3.25, EpCAM+ single cells, transcriptome 23 |
| GSM2536899 |
P3.25, EpCAM+ single cells, transcriptome 24 |
| GSM2536900 |
P3.25, EpCAM+ single cells, transcriptome 25 |
| GSM2536901 |
P3.25, EpCAM+ single cells, transcriptome 26 |
| GSM2536902 |
P3.25, EpCAM+ single cells, transcriptome 27 |
| GSM2536903 |
P3.25, EpCAM+ single cells, transcriptome 28 |
| GSM2536904 |
P3.25, EpCAM+ single cells, transcriptome 29 |
| GSM2536905 |
P3.25, EpCAM+ single cells, transcriptome 30 |
| GSM2536906 |
P3.25, EpCAM+ single cells, transcriptome 31 |
| GSM2536907 |
P3.25, EpCAM+ single cells, transcriptome 32 |
| GSM2536908 |
P3.25, EpCAM+ single cells, transcriptome 33 |
| GSM2536909 |
P3.25, EpCAM+ single cells, transcriptome 34 |
| GSM2536910 |
P3.25, EpCAM+ single cells, transcriptome 35 |
| GSM2536911 |
P3.25, EpCAM+ single cells, transcriptome 36 |
| GSM2536912 |
P3.25, EpCAM+ single cells, transcriptome 37 |
| GSM2536913 |
P3.25, EpCAM+ single cells, transcriptome 38 |
| GSM2536914 |
P3.25, EpCAM+ single cells, transcriptome 39 |
| GSM2536915 |
P3.25, EpCAM+ single cells, transcriptome 40 |
| GSM2536916 |
P3.25, EpCAM+ single cells, transcriptome 41 |
| GSM2536917 |
P3.25, EpCAM+ single cells, transcriptome 42 |
| GSM2536918 |
P3.25, EpCAM+ single cells, transcriptome 43 |
| GSM2536919 |
P3.25, EpCAM+ single cells, transcriptome 44 |
| GSM2536920 |
P3.25, EpCAM+ single cells, transcriptome 45 |
| GSM2536921 |
P3.25, EpCAM+ single cells, transcriptome 46 |
| GSM2536922 |
P3.25, EpCAM+ single cells, transcriptome 47 |
| GSM2536923 |
P3.25, EpCAM+ single cells, transcriptome 48 |
| GSM2536924 |
P3.25, EpCAM+ single cells, transcriptome 49 |
| GSM2536925 |
P3.25, EpCAM+ single cells, transcriptome 50 |
| GSM2536926 |
P3.25, EpCAM+ single cells, transcriptome 51 |
| GSM2536927 |
P3.25, EpCAM+ single cells, transcriptome 52 |
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| Relations |
| BioProject |
PRJNA379264 |
| SRA |
SRP101924 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE96630_RAW.tar |
24.9 Mb |
(http)(custom) |
TAR (of FPKM_TRACKING) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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