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Series GSE9719 Query DataSets for GSE9719
Status Public on Jul 22, 2008
Title Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Gene expression analysis of 7d-old Arabidopsis seedlings exposed to short term (2 h) hypoxia, long term (9 h) hypoxia, and 1 h reoxygenation after long term (9 h) hypoxia to evaluate the regulation of gene expression at the level of translation.
Keywords: Time Course, hypoxia recovery, polysomal mRNA, IP RNA, polysomes, hypoxia stress, reoxygenation, translational control.
 
Overall design 30 samples, 5 conditions (2 hr hypoxia stress, 2hr non-stress, 9 hr hypoxia stress , 9 hr non-stress, 9 hr hypoxia with 1 hr recovery), 2 RNA pools (Total mRNA and polysomal mRNA), 3 replicates
 
Contributor(s) Branco-Price C, Jang C, Bailey-Serres J
Citation(s) 18665916, 24469793
Submission date Nov 28, 2007
Last update date Aug 28, 2018
Contact name Charles Jang
E-mail(s) cjang001@student.ucr.edu
Organization name UC Riverside
Department Botany and Plant Sciences
Lab Julia Bailey-Serres
Street address 2215 Batchelor Hall
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (30)
GSM245466 2 hr Non-Stress Total RNA Rep 1
GSM245467 2 hr Hypoxia Stress Total RNA Rep 1
GSM245468 9 hr Non-Stress Total RNA Rep 1
Relations
Affiliated with GSE69995
BioProject PRJNA103627

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE9719_RAW.tar 62.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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