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Series GSE98547 Query DataSets for GSE98547
Status Public on Jul 09, 2018
Title RAP2 Mediates Mechanotransduction to Hippo pathway
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Mammalian cells are surrounded by the extracellular matrix (ECM), which regulates intercellular signal transduction and provides structural support to cells. Mechanical forces generated by ECM play a key role in regulating cell behaviors including survival, growth, mobility, and differentiation. However, it is unclear how mechanical forces are sensed by cells and transmit biochemical signals to cell fate-determining transcription factors such as YAP (Yes-associated protein) and TAZ (transcriptional coactivator with PDZ-binding motif). Here we show the identification of Ras-associated protein 2 (RAP2) as an intracellular signal transducer that senses ECM rigidity and modulates cell survival and growth by negatively regulating YAP/TAZ. Activation of RAP2 by low ECM stiffness or contact inhibition triggers YAP/TAZ phosphorylation. Deletion of RAP2 leads to sustained YAP/TAZ activation in cells that grow on soft matrix or undergo contact inhibition, alters transcription programs initiated by low matrix stiffness, and results in cell transformation and malignant growth. Mechanistically, RAP2 can directly bind to Mitogen-activated protein kinase kinase kinase kinase 4/6/7 (MAP4K4/6/7) or Rho GTPase activating protein 29 (ARHGAP29), both of which lead to LATS1/2 activation and YAP/TAZ inhibition. These findings define a new molecular pathway that transmits mechanical cues to their effectors in the nucleus.
 
Overall design The overall goal is to examine expression changes in response to ECM stiffness. mRNA profiles of wild type (WT), RAP2A/B/C-tKO, LATS1/2-dKO, and YAP/TAZ-dKO HEK293A cells were generated using deep sequencing with three biological replicates.
 
Contributor(s) Meng Z, Qiu Y
Citation(s) 30135582
Submission date May 04, 2017
Last update date Jul 25, 2021
Contact name Bing Ren
Organization name University of California, San Diego School of Medicine
Street address 9500 Gilman Dr., CMM-East, Admin Area/Rm 2071
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (24)
GSM2598480 WT_1kPa_Rep1
GSM2598481 WT_1kPa_Rep2
GSM2598482 WT_1kPa_Rep3
Relations
BioProject PRJNA385490
SRA SRP106467

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98547_RAW.tar 38.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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